RNA id: TCONS_00004279


Basic Information

Item Value
RNA id TCONS_00004279
length 2692
RNA type mRNA
GC content 0.45
exon number 5
gene id XLOC_002231
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 32058692 ~ 32064405 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGGACAGAGACCGACTCCAACGCGCTTCTCCTCCAGGCCACACAAAGCACTAGAGTGCCTATCAATTTACTGCTTTATTAGTCTTCAAAACTATCTTTTTTAAACTTTCTGTCCAAAATAACATCACTGTTAATCCAATGAACTAGATTCGCTTTTAAGATTCGACTCCGGGTGGACGCACGATGCCTAATTTCTGCGCGGCGCTCAACTGCTCCAGGAACAGCACTCACTCGGTGCTGGCGTTCTTCAGGTTTCCACGGGACCCGGAGAGATGTAAGAAATGGGTGGAAAACTGCAGTCGCTCAGACCTGAAAGACAAAACACCGGATCATCTGAACAAGTACCACAGACTGTGTGCCAGACACTTTGAGCCTAACTTGATAACCAAAACTagccCTTTCAGGACTGTTCTGAAGGATAGTGCTGTACCAACTATATTTGACAATCCTTTTAAGCGGTCAAATAATGAGGCAGACAAGGATGCCCCTGaagcgaagaaaaataaatCGGACTCTCAAAGTGAGGAACCTAAAGATAATAGTGAAGCCGCCACCAAAGATGTGAATGAGAACAAAAATGGCGATGGGGTTGACAGCAGCCCTCCGGTCATTGATGAAGAGACGCTGAATAAAGAGTATCTCAAGTCTCTGTTTGATGTTGTTGTGATGATGGGCACCCAGAACATTCCTCTGCACGGCCACTCTGACAAAGAACCCAGAAGCAAAAGCTTCACTCCTAGCAACTTTCAGGCTCTGCTGGAGTACCGCATCAATGCAGGTGACGAATTCCTCAGAAAGAAGTTTGAGGGGTCACCTGTAAACCTCGAGCATTGCTCCTCTACCCAGTTACAACAGATCTTAGAAGTGATTGAAAAGTGCATTCGTGAAGAGCTGTTGGCTGAAGCTAAAGAAGGACGCTGCTTCTCTTTAGTTGTAGATAACCTGGTTGAGATAGAAGGAGAAAACTATGTCCCGTTATTTGTACGTTTTGTGGACAAGGCCAACTGTCTCCGGGAAGAGTTTGTCGACTTCCTGCTCTTTGAAGGCGACGTGGAGGCCATCACAGAGAGGCTTGTGACTGAACTGACTGAGAAATGTGGCCTGGACATGAAGTATTGCAGAGGACAGGCATATTTGTGTTCTGGGGTGTCCGCTATGAAGGTCAAAGCGATGGTGGCAAAAATAGCTGAGCTGCATCCGCTCGCAGTTCTCACTCCTTGCTCCAGTTGCTCCCTAAACATCTGCCTGGCAAACACAATGACGTTCACCGGAGTGCATCTCGTCATGTCTACCCTGAAAAAGCTGGATGCATTTTTCAGCAAATCGCCCTTGTTGCAAAATCAGCTGGAAAGTGCTATTTCGATCTACTACCAGGGAAATGAAGAGAAGGCTAATGTCCTTAAGGAGGCGTGCGGCTCTAAATGGACAGAGCAACACGATACCTTTGAATTGGCGGTTGACCTCTTGGAGTCTCTCCTGCTGTGTATGGACAGCGTGCATGATAATGAAGATCACAAATGGAGCGATGAAGTGGCGCACAATGCTTTTGTCATTTCCGAGGCATTGGCTGATTTTGAATACGTCATGACATTAGTGGTGTTGAAAAACACCCTTTCCTTCACCAGAGCCTTTGGCAAGAATCTGCAAGGGGAAACCAATGAGGTCTTCTTCGCTTCTGGCAGTCTAACCGCAGTTCTGCATTCACTGAATGAAGTTTATGAGAATATCGAGGTCTACCATGAGTTCTGGTTCGAAGAGGCTGTAAATCTGGCCGCATCTCTTGAAATCCCAGTAAAAGTACCAAGGCTGTACTTCAGAAAACGACCAACGTCTGGTGAGGAAATCCAACCTGAGACCTACTACAAAGACCAAGTAACCATCCCTGTGGTCAGCCATGTGATCAAGGAGCTGTCTGACCTGTTCTCTGAAAATCATCTGAAGGCCTTGAAGTCCTTGTCTCTTGTCCCTGCCATCATGGGACAGCTGAAGTTCAACACCACAGAGGAGACCAGCGTGGACATTTACAAAGATGACCTGCTGAACCCAGACACCTTTCCTGCTGAGCTGCACTGCTGGAAGATCAAATGGAAACATGGAACCAAAGATGTGATTTTGCCATCGACCATCTACGAGACGCTTCAGCTGTCCGATGTGAAGTTCTTTCCCAACGTTTGTGCTCTACTGAAAGTTCTGTACAATCTGCCACTCTTCGCTCTGACAAATGACAAATGCAGCACTGCAAAACAGCGACTGATGGCGTACCTGCAAGATACACCTGTGAATCACAGAAACAAGAGTATGGCCCTGTTCTATATTAACTGTGCCATTAAGCATGATTTGGACAGCATGGTTGAGACCTACTTGAAAATGTATCAAGAAAGTGAGCCAACAGAGAAACAGGATTCATCACAGGAAGCAGTGCAGTCTTAAATATAGCAGTACGATGACTCTGCTAGTCAAAGAGCAGTTTGTAGTTTTCGCATCATTTTGTTATCTTTGCTTTTTATGTACAGTCATCCAAGATTACCAGGACTTTTCCTATTGTTCTACTCCCACTGTGTATATAAAAGTGGACTCCCAGTCTGAATTGATTTGAACACATTGAAAATGATCTTCTCCTGTCCAGTTccataaatgtgttgaaattgtTAAAGCTGTTTTTCAGAATTAAATACCTTTCTGATAAGGGTAAA

Function

GO:

id name namespace
GO:0016310 phosphorylation biological_process
GO:0016740 transferase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2045 Predicted to enable DNA binding activity; kinase activity; and metal ion binding activity. Predicted to act upstream of or within phosphorylation. Orthologous to human THAP12 (THAP domain containing 12).

Ensembl:

ensembl_id ENSDART00000062309

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005912 lncRNA upstream 110148 31946837 ~ 31948544 (+) True XLOC_002229
TCONS_00005720 lncRNA upstream 116516 31869282 ~ 31942176 (+) False XLOC_002228
TCONS_00005719 lncRNA upstream 289739 31742998 ~ 31768953 (+) True XLOC_002226
TCONS_00004263 lncRNA upstream 1070588 30978386 ~ 30988104 (+) False XLOC_002219
TCONS_00005913 lncRNA downstream 195338 32259743 ~ 32264298 (+) True XLOC_002234
TCONS_00005914 lncRNA downstream 520012 32584417 ~ 32592071 (+) True XLOC_002237
TCONS_00005915 lncRNA downstream 1200976 33265381 ~ 33265687 (+) True XLOC_002243
TCONS_00005721 lncRNA downstream 1292691 33357096 ~ 33359026 (+) False XLOC_002244
TCONS_00005722 lncRNA downstream 1293439 33357844 ~ 33359026 (+) True XLOC_002244
TCONS_00004278 mRNA upstream 614 32050906 ~ 32058078 (+) True XLOC_002230
TCONS_00004275 mRNA upstream 16846 31938796 ~ 32041846 (+) False XLOC_002228
TCONS_00004276 mRNA upstream 20429 31951338 ~ 32038263 (+) False XLOC_002228
TCONS_00004277 mRNA upstream 21634 31953502 ~ 32037058 (+) True XLOC_002228
TCONS_00004274 mRNA upstream 197218 31809226 ~ 31861474 (+) True XLOC_002227
TCONS_00004280 mRNA downstream 1950 32066355 ~ 32072782 (+) False XLOC_002232
TCONS_00004281 mRNA downstream 2132 32066537 ~ 32072789 (+) True XLOC_002232
TCONS_00004282 mRNA downstream 39900 32104305 ~ 32123204 (+) True XLOC_002233
TCONS_00004284 mRNA downstream 496262 32560667 ~ 32581374 (+) False XLOC_002236
TCONS_00004285 mRNA downstream 496912 32561317 ~ 32601380 (+) True XLOC_002236
TCONS_00004273 other upstream 365916 31692662 ~ 31692776 (+) True XLOC_002225
TCONS_00004262 other upstream 1298648 30759929 ~ 30760044 (+) True XLOC_002218
TCONS_00004261 other upstream 1322424 30736148 ~ 30736268 (+) True XLOC_002217
TCONS_00004255 other upstream 2146996 29910622 ~ 29911696 (+) True XLOC_002215
TCONS_00004250 other upstream 2206450 29852147 ~ 29852242 (+) True XLOC_002214
TCONS_00004283 other downstream 331375 32395780 ~ 32395896 (+) True XLOC_002235
TCONS_00004290 other downstream 937914 33002319 ~ 33002433 (+) True XLOC_002241
TCONS_00004303 other downstream 1638037 33702442 ~ 33710220 (+) True XLOC_002250
TCONS_00004313 other downstream 1971284 34035689 ~ 34043319 (+) True XLOC_002255
TCONS_00004315 other downstream 1982955 34047360 ~ 34058765 (+) False XLOC_002256

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000304_15467093_15471138.mRNA True 2573 mRNA 0.45 5 CI01000304 15467093 ~ 15471482 (+)