Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00004247 |
| length | 1953 |
| RNA type | mRNA |
| GC content | 0.50 |
| exon number | 8 |
| gene id | XLOC_002211 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007121.7 |
| NCBI id | CM002894.2 |
| chromosome length | 45420867 |
| location | 29849497 ~ 29887864 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006986 | response to unfolded protein | biological_process |
| GO:0048260 | positive regulation of receptor-mediated endocytosis | biological_process |
| GO:1902946 | protein localization to early endosome | biological_process |
| GO:0016192 | vesicle-mediated transport | biological_process |
| GO:0031101 | fin regeneration | biological_process |
| GO:0034620 | cellular response to unfolded protein | biological_process |
| GO:0040036 | regulation of fibroblast growth factor receptor signaling pathway | biological_process |
| GO:0051085 | chaperone cofactor-dependent protein refolding | biological_process |
| GO:0042026 | protein refolding | biological_process |
| GO:0005829 | cytosol | cellular_component |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0005524 | ATP binding | molecular_function |
| GO:0044183 | protein folding chaperone | molecular_function |
| GO:0051787 | misfolded protein binding | molecular_function |
| GO:0031072 | heat shock protein binding | molecular_function |
| GO:0000166 | nucleotide binding | molecular_function |
| GO:0016887 | ATPase activity | molecular_function |
| GO:0051082 | unfolded protein binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-990415-92 | Predicted to enable several functions, including ATP binding activity; ATP hydrolysis activity; and misfolded protein binding activity. Acts upstream of or within several processes, including fin regeneration; positive regulation of receptor-mediated endocytosis; and protein localization to early endosome. Predicted to be active in cytosol; nucleus; and plasma membrane. Is expressed in several structures, including head; immature eye; nervous system; presumptive neural plate; and swim bladder. Human ortholog(s) of this gene implicated in Parkinson's disease and renal hypertension. Orthologous to human HSPA8 (heat shock protein family A (Hsp70) member 8). |
| ensembl_id | ENSDART00000168898 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00004241 | lncRNA | upstream | 64426 | 29781637 ~ 29785904 (+) | True | XLOC_002208 |
| TCONS_00005718 | lncRNA | upstream | 758729 | 29091237 ~ 29091601 (+) | True | XLOC_002201 |
| TCONS_00005907 | lncRNA | upstream | 1395245 | 28442909 ~ 28455085 (+) | True | XLOC_002199 |
| TCONS_00004221 | lncRNA | upstream | 1419558 | 28429557 ~ 28430772 (+) | True | XLOC_002198 |
| TCONS_00005906 | lncRNA | upstream | 1603910 | 28233240 ~ 28246420 (+) | True | XLOC_002195 |
| TCONS_00005908 | lncRNA | downstream | 40210 | 29893626 ~ 29907022 (+) | False | XLOC_002215 |
| TCONS_00005909 | lncRNA | downstream | 42637 | 29896053 ~ 29907022 (+) | False | XLOC_002215 |
| TCONS_00005910 | lncRNA | downstream | 52810 | 29906226 ~ 29911581 (+) | False | XLOC_002215 |
| TCONS_00004260 | lncRNA | downstream | 644665 | 30498081 ~ 30541081 (+) | True | XLOC_002216 |
| TCONS_00004263 | lncRNA | downstream | 1124970 | 30978386 ~ 30988104 (+) | False | XLOC_002219 |
| TCONS_00004243 | mRNA | upstream | 1817 | 29840725 ~ 29848513 (+) | True | XLOC_002210 |
| TCONS_00004242 | mRNA | upstream | 32741 | 29816681 ~ 29817589 (+) | True | XLOC_002209 |
| TCONS_00004239 | mRNA | upstream | 58864 | 29770120 ~ 29791466 (+) | False | XLOC_002208 |
| TCONS_00004240 | mRNA | upstream | 59557 | 29770242 ~ 29790773 (+) | False | XLOC_002208 |
| TCONS_00004238 | mRNA | upstream | 145069 | 29698467 ~ 29705261 (+) | True | XLOC_002206 |
| TCONS_00004253 | mRNA | downstream | 1797 | 29855213 ~ 29887864 (+) | False | XLOC_002211 |
| TCONS_00004252 | mRNA | downstream | 1797 | 29855213 ~ 29887864 (+) | False | XLOC_002211 |
| TCONS_00004254 | mRNA | downstream | 1865 | 29855281 ~ 29870660 (+) | True | XLOC_002211 |
| TCONS_00004256 | mRNA | downstream | 110102 | 29963518 ~ 30576089 (+) | False | XLOC_002216 |
| TCONS_00004257 | mRNA | downstream | 110200 | 29963616 ~ 30579384 (+) | False | XLOC_002216 |
| TCONS_00004237 | other | upstream | 376874 | 29473342 ~ 29473456 (+) | True | XLOC_002207 |
| TCONS_00004235 | other | upstream | 517155 | 29333059 ~ 29333175 (+) | True | XLOC_002205 |
| TCONS_00004234 | other | upstream | 581917 | 29266791 ~ 29268413 (+) | True | XLOC_002204 |
| TCONS_00004217 | other | upstream | 1597535 | 28252678 ~ 28252795 (+) | True | XLOC_002196 |
| TCONS_00004216 | other | upstream | 1688083 | 28160297 ~ 28162247 (+) | True | XLOC_002194 |
| TCONS_00004255 | other | downstream | 57206 | 29910622 ~ 29911696 (+) | True | XLOC_002215 |
| TCONS_00004261 | other | downstream | 882732 | 30736148 ~ 30736268 (+) | True | XLOC_002217 |
| TCONS_00004262 | other | downstream | 906513 | 30759929 ~ 30760044 (+) | True | XLOC_002218 |
| TCONS_00004273 | other | downstream | 1839246 | 31692662 ~ 31692776 (+) | True | XLOC_002225 |
| TCONS_00004283 | other | downstream | 2542364 | 32395780 ~ 32395896 (+) | True | XLOC_002235 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| grasscarp (Ctenopharyngodon idella) | CI01000304_14352375_14355516.mRNA | True | 1947 | mRNA | 0.51 | 8 | CI01000304 | 14352375 ~ 14355516 (+) |
| bowfin (Amia calva) | AMCG00004371 | True | 2462 | mRNA | 0.53 | 10 | CM030121.1 | 44684572 ~ 44692353 (-) |
