Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00004251 |
| length | 678 |
| RNA type | mRNA |
| GC content | 0.46 |
| exon number | 3 |
| gene id | XLOC_002211 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007121.7 |
| NCBI id | CM002894.2 |
| chromosome length | 45420867 |
| location | 29849497 ~ 29887864 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006986 | response to unfolded protein | biological_process |
| GO:0048260 | positive regulation of receptor-mediated endocytosis | biological_process |
| GO:1902946 | protein localization to early endosome | biological_process |
| GO:0016192 | vesicle-mediated transport | biological_process |
| GO:0031101 | fin regeneration | biological_process |
| GO:0034620 | cellular response to unfolded protein | biological_process |
| GO:0040036 | regulation of fibroblast growth factor receptor signaling pathway | biological_process |
| GO:0051085 | chaperone cofactor-dependent protein refolding | biological_process |
| GO:0042026 | protein refolding | biological_process |
| GO:0005829 | cytosol | cellular_component |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0005524 | ATP binding | molecular_function |
| GO:0044183 | protein folding chaperone | molecular_function |
| GO:0051787 | misfolded protein binding | molecular_function |
| GO:0031072 | heat shock protein binding | molecular_function |
| GO:0000166 | nucleotide binding | molecular_function |
| GO:0016887 | ATPase activity | molecular_function |
| GO:0051082 | unfolded protein binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-990415-92 | Predicted to enable several functions, including ATP binding activity; ATP hydrolysis activity; and misfolded protein binding activity. Acts upstream of or within several processes, including fin regeneration; positive regulation of receptor-mediated endocytosis; and protein localization to early endosome. Predicted to be active in cytosol; nucleus; and plasma membrane. Is expressed in several structures, including head; immature eye; nervous system; presumptive neural plate; and swim bladder. Human ortholog(s) of this gene implicated in Parkinson's disease and renal hypertension. Orthologous to human HSPA8 (heat shock protein family A (Hsp70) member 8). |
| ensembl_id | ENSDART00000141549 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00004241 | lncRNA | upstream | 66773 | 29781637 ~ 29785904 (+) | True | XLOC_002208 |
| TCONS_00005718 | lncRNA | upstream | 761076 | 29091237 ~ 29091601 (+) | True | XLOC_002201 |
| TCONS_00005907 | lncRNA | upstream | 1397592 | 28442909 ~ 28455085 (+) | True | XLOC_002199 |
| TCONS_00004221 | lncRNA | upstream | 1421905 | 28429557 ~ 28430772 (+) | True | XLOC_002198 |
| TCONS_00005906 | lncRNA | upstream | 1606257 | 28233240 ~ 28246420 (+) | True | XLOC_002195 |
| TCONS_00005908 | lncRNA | downstream | 39916 | 29893626 ~ 29907022 (+) | False | XLOC_002215 |
| TCONS_00005909 | lncRNA | downstream | 42343 | 29896053 ~ 29907022 (+) | False | XLOC_002215 |
| TCONS_00005910 | lncRNA | downstream | 52516 | 29906226 ~ 29911581 (+) | False | XLOC_002215 |
| TCONS_00004260 | lncRNA | downstream | 644371 | 30498081 ~ 30541081 (+) | True | XLOC_002216 |
| TCONS_00004263 | lncRNA | downstream | 1124676 | 30978386 ~ 30988104 (+) | False | XLOC_002219 |
| TCONS_00004245 | mRNA | upstream | 1359 | 29849543 ~ 29851318 (+) | False | XLOC_002211 |
| TCONS_00004243 | mRNA | upstream | 4164 | 29840725 ~ 29848513 (+) | True | XLOC_002210 |
| TCONS_00004242 | mRNA | upstream | 35088 | 29816681 ~ 29817589 (+) | True | XLOC_002209 |
| TCONS_00004239 | mRNA | upstream | 61211 | 29770120 ~ 29791466 (+) | False | XLOC_002208 |
| TCONS_00004240 | mRNA | upstream | 61904 | 29770242 ~ 29790773 (+) | False | XLOC_002208 |
| TCONS_00004253 | mRNA | downstream | 1503 | 29855213 ~ 29887864 (+) | False | XLOC_002211 |
| TCONS_00004252 | mRNA | downstream | 1503 | 29855213 ~ 29887864 (+) | False | XLOC_002211 |
| TCONS_00004254 | mRNA | downstream | 1571 | 29855281 ~ 29870660 (+) | True | XLOC_002211 |
| TCONS_00004256 | mRNA | downstream | 109808 | 29963518 ~ 30576089 (+) | False | XLOC_002216 |
| TCONS_00004257 | mRNA | downstream | 109906 | 29963616 ~ 30579384 (+) | False | XLOC_002216 |
| TCONS_00004250 | other | upstream | 435 | 29852147 ~ 29852242 (+) | True | XLOC_002214 |
| TCONS_00004249 | other | upstream | 1582 | 29851000 ~ 29851095 (+) | True | XLOC_002213 |
| TCONS_00004248 | other | upstream | 2010 | 29850572 ~ 29850667 (+) | True | XLOC_002212 |
| TCONS_00004237 | other | upstream | 379221 | 29473342 ~ 29473456 (+) | True | XLOC_002207 |
| TCONS_00004235 | other | upstream | 519502 | 29333059 ~ 29333175 (+) | True | XLOC_002205 |
| TCONS_00004255 | other | downstream | 56912 | 29910622 ~ 29911696 (+) | True | XLOC_002215 |
| TCONS_00004261 | other | downstream | 882438 | 30736148 ~ 30736268 (+) | True | XLOC_002217 |
| TCONS_00004262 | other | downstream | 906219 | 30759929 ~ 30760044 (+) | True | XLOC_002218 |
| TCONS_00004273 | other | downstream | 1838952 | 31692662 ~ 31692776 (+) | True | XLOC_002225 |
| TCONS_00004283 | other | downstream | 2542070 | 32395780 ~ 32395896 (+) | True | XLOC_002235 |
