RNA id: TCONS_00004218


Basic Information

Item Value
RNA id TCONS_00004218
length 1034
RNA type mRNA
GC content 0.44
exon number 2
gene id XLOC_002197
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 28306749 ~ 28309317 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTCGCGGGTTCTTTAAACTCGTGACGTCATCAGTAAGCGTCTTCCTGTCACAAGCGGTGTGGAGTTGGAAGCAAACTTCAGGTTGCTGAATCATTTTGCTTTGTGACATGAGGCTGGACTCTCTGTACGGGCCGTTCGGTCTGGGTGTTCTGGCTGGTCTGGGCTGCGGGCTCTGTGTCGGATGGCACCTCAGTGGGCGTTTTGGCAGATCGTCCCGCAGCATGATGACAGCTTTAGGGAACAGCGCCAGCAATGGCAGCGAGACCAGTGTGATGGGCGAAAGCGGAGAGTTCAAAATGATTCTGGTGGTCAGAACAGATCTGAAAATGGGCAAAGGTAAAGTGGCAGCGCAGTGCTCTCACGCGGCCGTGTCAGCCTACAAACAGGTCCAGCGGCGAAACCCAGAGCTCCTGAAGCAGTGGGAGAACAGCGGACAACCCAAAGTGGTGGTTAAAGCTCCAGACGAGGATTGTCTACTGGATCTGCTGGCCCACGCCAAAGAGGTCGGGCTGCCCGTTAGTTTAATCCAAGATGCTGGAAGAACCCAAATTGCTCCCGGGTCAAGGACAGTTCTTGGCATAGGACCCGGACAGGCTGACCTAATTGATAAAGTGACTGGACATCTTAAATTATACTGAACAACAACACTAATGGACTAAGACAGAACTAAACTAGGACCTGCTCTTAGTTTTTACATGATTATAAAGATTGGATAAATGGAATTAAGTGGATTAAAATGACACTTTGATTTACAGGTTTAAGCATTCaagtaaaactattttaattcaaAGGTTTTTTTTGTAAGATTATGAATGAAATTGCATTATTTGGGAATCAAATGTGAATCAACCCCTTATATTCAATGCAAtaagacattttttttgttaaacttggGTGCAAATTGACCTGTTTTGTTCCCTGATGATAAGATCAATTGAGTCAGCAGATTTTAAACACTGGGATTATCTGCTTTTATTGAAGTTAAATAGAAGCATTAcagtgtaaaataaacattttcactcAAATATGAAAA

Function

GO:

id name namespace
GO:2000210 positive regulation of anoikis biological_process
GO:2000811 negative regulation of anoikis biological_process
GO:0005829 cytosol cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005739 mitochondrion cellular_component
GO:0016787 hydrolase activity molecular_function
GO:0004045 aminoacyl-tRNA hydrolase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050522-163 Predicted to enable aminoacyl-tRNA hydrolase activity. Predicted to be involved in negative regulation of anoikis and positive regulation of anoikis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytosol and mitochondrion. Orthologous to human PTRH2 (peptidyl-tRNA hydrolase 2).

Ensembl:

ensembl_id ENSDART00000142016

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005905 lncRNA upstream 60329 28203764 ~ 28246420 (+) False XLOC_002195
TCONS_00005906 lncRNA upstream 60329 28233240 ~ 28246420 (+) True XLOC_002195
TCONS_00005904 lncRNA upstream 1107767 27169126 ~ 27198982 (+) True XLOC_002193
TCONS_00005902 lncRNA upstream 1242344 27061761 ~ 27064405 (+) False XLOC_002190
TCONS_00005903 lncRNA upstream 1242344 27061942 ~ 27064405 (+) False XLOC_002190
TCONS_00004221 lncRNA downstream 120240 28429557 ~ 28430772 (+) True XLOC_002198
TCONS_00005907 lncRNA downstream 133592 28442909 ~ 28455085 (+) True XLOC_002199
TCONS_00005718 lncRNA downstream 781920 29091237 ~ 29091601 (+) True XLOC_002201
TCONS_00004241 lncRNA downstream 1472320 29781637 ~ 29785904 (+) True XLOC_002208
TCONS_00005908 lncRNA downstream 1584309 29893626 ~ 29907022 (+) False XLOC_002215
TCONS_00004215 mRNA upstream 137580 28160265 ~ 28169169 (+) False XLOC_002194
TCONS_00004213 mRNA upstream 1148509 27096043 ~ 27158240 (+) False XLOC_002192
TCONS_00004214 mRNA upstream 1148511 27096116 ~ 27158238 (+) True XLOC_002192
TCONS_00004212 mRNA upstream 1213715 27068251 ~ 27093034 (+) True XLOC_002191
TCONS_00004209 mRNA upstream 1247763 27052642 ~ 27058986 (+) True XLOC_002189
TCONS_00004220 mRNA downstream 118905 28428222 ~ 28431809 (+) False XLOC_002198
TCONS_00004222 mRNA downstream 278129 28587446 ~ 28733002 (+) False XLOC_002200
TCONS_00004223 mRNA downstream 278184 28587501 ~ 28730385 (+) True XLOC_002200
TCONS_00004224 mRNA downstream 828165 29137482 ~ 29223763 (+) False XLOC_002202
TCONS_00004225 mRNA downstream 828704 29138021 ~ 29225165 (+) False XLOC_002202
TCONS_00004217 other upstream 53954 28252678 ~ 28252795 (+) True XLOC_002196
TCONS_00004216 other upstream 144502 28160297 ~ 28162247 (+) True XLOC_002194
TCONS_00004211 other upstream 1243311 27063354 ~ 27063438 (+) True XLOC_002190
TCONS_00004210 other upstream 1243492 27063174 ~ 27063257 (+) False XLOC_002190
TCONS_00004170 other upstream 2000406 26306229 ~ 26306343 (+) True XLOC_002162
TCONS_00004234 other downstream 957474 29266791 ~ 29268413 (+) True XLOC_002204
TCONS_00004235 other downstream 1023742 29333059 ~ 29333175 (+) True XLOC_002205
TCONS_00004237 other downstream 1164025 29473342 ~ 29473456 (+) True XLOC_002207
TCONS_00004248 other downstream 1541255 29850572 ~ 29850667 (+) True XLOC_002212
TCONS_00004249 other downstream 1541683 29851000 ~ 29851095 (+) True XLOC_002213

Expression Profile

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