XLOC_002191 (ehd1b)


Basic Information

Item Value
gene id XLOC_002191
gene name ehd1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 27068251 ~ 27093034 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004212
GGGGGCGCGAGCTCGTACTGTCACGCGCAGAAGTTCTCGAGCTGTGGGAGTCTCGAGAGGAGCTGTGCTTTCCGCGCGGATATAAAAGAAAACTGCAAGGTCGCAACTGACGTGTCAACTAACCTAACTTTAATTTACGAAAGTAGTTAATGTTTGCAGAAAACTAAGGAGCAACAACAATTCTCCGGGTAGCGAACAGCTGACAGCACCGACCCACCACGCTGGCAGTCCGCGGAGCCTGACCAGATCGTAGGACCAGACACTGGGCCGTTAATTCATCAGAACCGTTGCCTAGAAACCAGCAAAAAAACTCGAAGACCGTCGCCAAAGGGCTTTTAGTTTAGAAAGGGGcttatttttcataatttccaAAATGTTCAGTTGGTCTAACAAAGATGGAAAAAAGAAAGACCCGGAGTTATTTCAAACGGTTTCGGACGGGCTAAAGAGACTGTACAGGACCAAACTTTTCCCCTTAGAGGACGCATACCGCTTTCACGACTTCCACTCTCCGGCTCTGGAAGATGCTGATTTCGATAACAAGCCCATGGTACTTTTGGTGGGCCAATACTCTACAGGGAAAACCACTTTTATTCGGCATCTCATGGAGCAGGATTTCCCTGGTATGCGCATAGGGCCCGAACCGACCACCGATTCATTCATAGCGGTTATGCACGGGGAACAAGAAGGTCTCATCCCCGGCAATGCTTTAGTGGTTGACCCCAAGAAACCCTTCAGAAAACTCAACGCCTTTGGAAACGCCTTTCTGAACAGgtTCATATGTGCTCAGATGCCAAACCCAGTGCTGGACAGCATCAGCATCATAGACACTCCTGGAATTCTGTCCGGAGAGAAACAACGGATCAGCAGAGGTTATGATTTTGCTGCGGTGCTTGAATGGTTTGCCGAACGGGTGGACCGAATCATTCTTCTCTTTGACGCACACAAGTTGGACATCTCGGATGAGTTCTCCGAGGTGATCCGAGCTCTGAAAAACCATGAGGACAAAATGCGGGTGGTGCTTAATAAAGCTGATCAGATCGGGACCCAGCAGCTTATGAGGGTGTATGGCGCCCTCATGTGGTCACTTGGGAAAATTGTCAACACTCCAGAGGTCATACGTGTGTATATTGGCTCTTTCTGGGCTCAGCCGCTCCTGGTTGCAGATAACAGGAAATTGTTTGAGGCAGAGGAACAAGACCTTTTCCGTGACATCCAGGGACTTCCACGTAATGCAGCACTGCGCAAACTGAATGACCTTATCAAACGGGCCCGTCTAGCCAAAGTTCAAGCATACATCATCAGCTCTTTGAAGAAAGAAATGCCAAATGTGTTTGGAAAAGAGAACAAGAAAAAGGAGCTCATTGCTAACCTGGGTGAAATCTATGCAAAGATTGAAAAAGAACATCAGATCTCCCCTGGTGATTTTCCTAAACTCAGTAAAATGCAGGAAGTCCTCGCTGGACAGGACTTCACTAAGTTTCAAGGATTGAAGCCCAAGCTTTTGGAATCAGTGGAAGACATGCTGGCCAACGACATTGCCAAACTCATGACCCTCGTCCGGCAGGAGGAGGCCTCCATGCCAAGCCAGGCTGTCCAAGGTGGAGCCTTTGAAGGCACCATGAATGGCCCCTTCGGGCACGGCTACGGAGAAGGTGCCGGTGAAGGCATTGATGAGCTGGAGTGGGTAGTGGCCAAAGACAAACCGACATACGACGAGATCTTCTACACTTTGTCACCCGTCAATGGGAAGGTGTCTGGTGCCATGGCCAAGAAGGAGATGGTTAAGTCCAAGCTGCCCAATAATGTTCTAGGAAAGATCTGGAAGCTCGCTGACGTGGATAAGGATGGATACCTGGATGACGAGGAGTTCGCCCTGGCCAACCACCTCATCAAGGTTAAACTGGAAGGTCACGAGTTGCCAGCTGATCTTCCAGATCACCTTGTGCCACCTTCAAAACGAGAACAGTAAACCATTTgggaaaataaatgttattattgaGCCAAACTGTGTAGAGGTTATGATATGGGTGGAAGGGGTAATttagaaatatgaaaatatatcaaCAGAATTTATGATATAATAAAACAGTATGCATTAGCTGCGGAAAAAGAGCCAGAATTGCTTTTAACTTATCCAACACTATAGTTCTCActcttattttcttcttttttttttgttagacatTTAGTAAGCATCCTGatcaaaactaataaatattaattgcTATTGTATTTCTCAGAAGCTagatgcagccaaactttaagcACGTACGATGGTATACTGGCAGGGAGATGATAGTCCATTATGACCAAACAGGCTGTATTCGAAAACTCTTGGAGGTATTTAATTGTTTGAAAGCTTTACATTGATGCTGCTTTGTACTTAAGGTCATGCTGGGAGAAATAGTTGTGCTTCATTCTTAAACTCTACTAACTCTTCTGATGGGTTCAGATTGTCAAGAGTTTAACTTTCAGGTAAACCAGATAAACTAGATCACACATGCTGCCTTCTTTTGGTGTTTCTTCACTATTTTAAAGAACTCAAGGCTTTGAACTGTTCTAACAAAACATTCAGCAGCCAGAGACTCAAAATCTAGGATCTGTCAGTGGTTCACACTGGCTTCTATATCTGTTTTTGAGTCCCTAACCCTGCTAAAGTAGCAAAAGCTTTATATACTtcctttataaaaacaaaaactgttcaTATGTAAATTTCTTTGGTCTAGTTTGCAATAAAAAACTACCAAAA

Function

symbol description
ehd1b Predicted to enable ATP binding activity; GTP binding activity; and calcium ion binding activity. Involved in cilium assembly. Predicted to be located in endosome and membrane. Predicted to be active in cytoplasmic vesicle; perinuclear region of cytoplasm; and plasma membrane. Is expressed in several structures, including cardiovascular system; mesoderm; musculature system; pronephric duct; and sensory system. Orthologous to human EHD1 (EH domain containing 1).

GO:

id name namespace
GO:0072659 protein localization to plasma membrane biological_process
GO:0006897 endocytosis biological_process
GO:0016197 endosomal transport biological_process
GO:0032456 endocytic recycling biological_process
GO:0060271 cilium assembly biological_process
GO:0048471 perinuclear region of cytoplasm cellular_component
GO:0005769 early endosome cellular_component
GO:0030139 endocytic vesicle cellular_component
GO:0055038 recycling endosome membrane cellular_component
GO:0005886 plasma membrane cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0005525 GTP binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-2069 Predicted to enable ATP binding activity; GTP binding activity; and calcium ion binding activity. Involved in cilium assembly. Predicted to be located in endosome and membrane. Predicted to be active in cytoplasmic vesicle; perinuclear region of cytoplasm; and plasma membrane. Is expressed in several structures, including cardiovascular system; mesoderm; musculature system; pronephric duct; and sensory system. Orthologous to human EHD1 (EH domain containing 1).

Ensembl:

ensembl_id ENSDARG00000014793

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004212 True 2752 mRNA 0.45 5 27068251 27093034

Neighbor

gene id symbol gene type direction distance location
XLOC_002190 NA coding upstream 3846 27061761 ~ 27064405 (+)
XLOC_002189 wdr74 coding upstream 9265 27052642 ~ 27058986 (+)
XLOC_002188 BX248510.6 coding upstream 25087 27021164 ~ 27043164 (+)
XLOC_002187 faub coding upstream 76248 26990095 ~ 26992003 (+)
XLOC_002186 tm7sf2 coding upstream 89875 26972755 ~ 26978376 (+)
XLOC_002192 cxadr coding downstream 3009 27096043 ~ 27158240 (+)
XLOC_002193 NA coding downstream 76092 27169126 ~ 27198982 (+)
XLOC_002194 rnft1 coding downstream 1067231 28160265 ~ 28169169 (+)
XLOC_002195 NA coding downstream 1110730 28203764 ~ 28246420 (+)
XLOC_002196 CU207388.1 coding downstream 1159644 28252678 ~ 28252795 (+)
XLOC_002181 NA non-coding upstream 185112 26882702 ~ 26883139 (+)
XLOC_002175 NA non-coding upstream 281466 26786369 ~ 26786785 (+)
XLOC_002174 CR545465.1 non-coding upstream 296574 26766385 ~ 26771677 (+)
XLOC_002167 NA non-coding upstream 438969 26628793 ~ 26629282 (+)
XLOC_002199 NA non-coding downstream 1349875 28442909 ~ 28455085 (+)
XLOC_002201 NA non-coding downstream 1998203 29091237 ~ 29091601 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000304_12601154_12621980 EHD1B, EHD1 coding CI01000304 null 12600836 ~ 12621993 (+)