XLOC_002186 (tm7sf2)


Basic Information

Item Value
gene id XLOC_002186
gene name tm7sf2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 26972755 ~ 26978376 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004203
GGCAGCAGTATGTGCTGATTGGTCAGATACAGTGAGGCAAACAGCGCGTTATGGGCGAATCTACGCAGGCGTCTCGGTCATTTACAGTGATGATGAGCGATAACAATACAGTACAACAGTGACTTCATGAGAACAGAGGCAAAATGAAGCCTAACAAGCACAAAGCATCACATTCAGCTGAAAGGGAATTTGGAGGTGCTCTTGGTGCCACCTGCATCCCAGTGTTCCTGCCTCTGACAGTTCTGTACCTGCTCAGTGTGTGCCGGTCTCCAGCTGCCAGTGTCCTGCAGTGGCCTCCTCCTCTACCACCTGCTACACATTTATGGGATCCTTGGGCTGCTGTTCTTATTGCAGGTTGGATTGCCCTGCAGAGTTTTCTCTACCTACTGCCTATAGGGAAGGTTTCTGAAGGTTTGGTTCTCAGAGATGGATCCAGACTGAAATATCCCATTAATGGTTTCCATGCCCTGAGCATTACTGCTGTTCTGTTGATCATATGTATTTTGCTGGGAATGCCACTCGGGCACCTGTTTGAGCTCATTTTGCCTCTGGCTATATGTGCCATTGGAGTTTCCTATCTGCTGTCAATGTATCTGTACATCCGCTCCTTCTGGGCACATCAACATGCTTTATCACTTGGGGGAAACACAGGAAATCCTCTGTATGACTTCTTCATGGGTCGAGAGCTCAACCCTCGCATTGGAAACTTTGACTTGAAATATTTCTGTGAACTAAGACCTGGATTAATAGGCTGGGTGGTCATAAACCTAGGGATGCTAATGAAAGAAGTAGAGCTGCGCGACTCTCCATCTCTTGCCATGCTGCTCGTCAATGGATTTCAGCTCCTCTACGTGACAGATGCTCTCTGGAATGAAGAGGCCGTTCTTACTACAATGGATATTGTGCATGATGGATTTGGGTTCATGTTGGCGTTTGGTGATCTGGCCTGGGTTCCCTTCACGTATAGTCTTCAGGCCATGTTTCTGGTTGTTCACCCACAGTCACTTAGTACTCTTGGTGCCGTGGGGATTGTGCTTCTAAATGGAATTGGCTATTACATTTTCAGGAGGTCCAACTCTCAGAAAAATCAGTTCAGAAGAGACCCCAAGCATAAAAGTGTAGCACACCTGGAAACTATCGCGACAGCAACAGGAAAGCGGCTGTTGGTATCAGGATGGTGGGGTTTTGTCAGACATCCAAACTACCTGGGTGACCTTCTGATGGCCCTAGCCTGGTCCCTGCCTTGTGGAATATCCCACATTCTGCCTTACTTCTACGTCATATATTTCACTATTCTGCTCATCCACCGAGAAGCCAGAGATGAGAAACAATGCCGAGCCAAATACGGAGTGGCCTGGGACACTTACTGCAGACGAGTGCCCTACAGAATAATCCCCTATGTTTATTAATGTGGACTGATGTGCTCTGAATGTCCAGCAGACTTTTATTTAGGTGAGGAAATGGACGCAACATCATCAATGGACAGCCAACATTACAAAATGTATTgcgtattgtttttatttgcattagaaccaaacattttctttttttttatatatatatattcttgtattatattattaaagagcATTTTAATATTG
>TCONS_00004204
TGTAACGTAACGTTACCCTgtaaatgttttgtcagctttgcTAAATGCTGTGTTTCACTCCATCTTTGTCCCAAACAGGCAAAATGAAGCCTAACAAGCACAAAGCATCACATTCAGCTGAAAGGGAATTTGGAGGTGCTCTTGGTGCCACCTGCATCCCAGTGTTCCTGCCTCTGACAGTTCTGTACCTGCTCAGTGTGTGCCGGTCTCCAGCTGCCAGTGTCCTGCAGTGGCCTCCTCCTCTACCACCTGCTACACATTTATGGGATCCTTGGGCTGCTGTTCTTATTGCAGGTTGGATTGCCCTGCAGAGTTTTCTCTACCTACTGCCTATAGGGAAGGTTTCTGAAGGTTTGGTTCTCAGAGATGGATCCAGACTGAAATATCCCATTAATGGTTTCCATGCCCTGAGCATTACTGCTGTTCTGTTGATCATATGTATTTTGCTGGGAATGCCACTCGGGCACCTGTTTGAGCTCATTTTGCCTCTGGCTATATGTGCCATTGGAGTTTCCTATCTGCTGTCAATGTATCTGTACATCCGCTCCTTCTGGGCACATCAACATGCTTTATCACTTGGGGGAAACACAGGAAATCCTCTGTATGACTTCTTCATGGGTCGAGAGCTCAACCCTCGCATTGGAAACTTTGACTTGAAATATTTCTGTGAACTAAGACCTGGATTAATAGGCTGGGTGGTCATAAACCTAGGGATGCTAATGAAAGAAGTAGAGCTGCGCGACTCTCCATCTCTTGCCATGCTGCTCGTCAATGGATTTCAGCTCCTCTACGTGACAGATGCTCTCTGGAATGAAGAGGCCGTTCTTACTACAATGGATATTGTGCATGATGGATTTGGGTTCATGTTGGCGTTTGGTGATCTGGCCTGGGTTCCCTTCACGTATAGTCTTCAGGCCATGTTTCTGGTTGTTCACCCACAGTCACTTAGTACTCTTGGTGCCGTGGGGATTGTGCTTCTAAATGGAATTGGCTATTACATTTTCAGGAGGTCCAACTCTCAGAAAAATCAGTTCAGAAGAGACCCCAAGC
>TCONS_00004205
GGCAAAATGAAGCCTAACAAGCACAAAGCATCACATTCAGCTGAAAGGGAATTTGGAGGTGCTCTTGGTGCCACCTGCATCCCAGTGTTCCTGCCTCTGACAGTTCTGTACCTGCTCAGTGTGTGCCGGTCTCCAGCTGCCAGTGTCCTGCAGTGGCCTCCTCCTCTACCACCTGCTACACATTTATGGGATCCTTGGGCTGCTGTTCTTATTGCAGGTTGGATTGCCCTGCAGAGTTTTCTCTACCTACTGCCTATAGGGAAGGTTTCTGAAGGTTTGGTTCTCAGAGATGGATCCAGACTGAAATATCCCATTAATGGTTTCCATGCCCTGAGCATTACTGCTGTTCTGTTGATCATATGTATTTTGCTGGGAATGCCACTCGGGCACCTGTTTGAGCTCATTTTGCCTCTGGCTATATGTGCCATTGGAGTTTCCTATCTGCTGTCAATGTATCTGTACATCCGCTCCTTCTGGGCACATCAACATGCTTTATCACTTGGGGGAAACACAGGAAATCCTCTGTATGACTTCTTCATGGGTCGAGAGCTCAACCCTCGCATTGGAAACTTTGACTTGAAATATTTCTGTGAACTAAGACCTGGATTAATAGGCTGGGTGGTCATAAACCTAGGGATGCTAATGAAAGAAGTAGAGCTGCGCGACTCTCCATCTCTTGCCATGCTGCTCGTCAATGGATTTCAGCTCCTCTACGTGACAGATGCTCTCTGGAATGAAGAGGCCGTTCTTACTACAATGGATATTGTGCATGATGGATTTGGGTTCATGTTGGCGTTTGGTGATCTGGCCTGGGTTCCCTTCACGTATAGTCTTCAGGCCATGTTTCTGGTTGTTCACCCACAGTCACTTAGTACTCTTGGTGCCGTGGGGATTGTGCTTCTAAATGGAATTGGCTATTACATTTTCAGGAGGTCCAACTCTCAGAAAAATCAGTTCAGAAGAGACCCCAAGCATAAAAGTGTAGCACACCTGGAAACTATCGCGACAGCAACAGGAAAGCGGCTGTTGGTATCAGGATGGTGGGGTTTTGTCAGACATCCAAACTACCTGGGTGACCTTCTGATGGCCCTAGCCTGGTCCCTGCCTTGTGGAATATCCCACATTCTGCCTTACTTCTACGTCATATATTTCACTATTCTGCTCATCCACCGAGAAGCCAGAGATGAGAAACAATGCCGAGCCAAATACGGAGTGGCCTGGGACACTTACTGCAGACGAGTGCCCTACAGAATAATCCCCTATGTTTATTAATGTGGACTG
>TCONS_00004206
GAATTGTGTGCCATGTGATTTATTTGTTGACAGGTTTCTGAAGGTTTGGTTCTCAGAGATGGATCCAGACTGAAATATCCCATTAATGGTTTCCATGCCCTGAGCATTACTGCTGTTCTGTTGATCATATGTATTTTGCTGGGAATGCCACTCGGGCACCTGTTTGAGCTCATTTTGCCTCTGGCTATATGTGCCATTGGAGTTTCCTATCTGCTGTCAATGTATCTGTACATCCGCTCCTTCTGGGCACATCAACATGCTTTATCACTTGGGGGAAACACAGGAAATCCTCTGTATGACTTCTTCATGGGTCGAGAGCTCAACCCTCGCATTGGAAACTTTGACTTGAAATATTTCTGTGAACTAAGACCTGGATTAATAGGCTGGGTGGTCATAAACCTAGGGATGCTAATGAAAGAAGTAGAGCTGCGCGACTCTCCATCTCTTGCCATGCTGCTCGTCAATGGATTTCAGCTCCTCTACGTGACAGATGCTCTCTGGAATGAAGAGGCCGTTCTTACTACAATGGATATTGTGCATGATGGATTTGGGTTCATGTTGGCGTTTGGT

Function

symbol description
tm7sf2 Predicted to enable oxidoreductase activity, acting on the CH-CH group of donors. Predicted to be involved in sterol biosynthetic process. Predicted to act upstream of or within cholesterol biosynthetic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in nuclear inner membrane. Predicted to be integral component of endoplasmic reticulum membrane. Is expressed in central nervous system; gut; and liver. Orthologous to human TM7SF2 (transmembrane 7 superfamily member 2).

GO:

id name namespace
GO:0016126 sterol biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0030176 integral component of endoplasmic reticulum membrane cellular_component
GO:0005637 nuclear inner membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors molecular_function
GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor molecular_function

KEGG:

id description
ko00100 Steroid biosynthesis

ZFIN:

id description
ZDB-GENE-041212-19 Predicted to enable oxidoreductase activity, acting on the CH-CH group of donors. Predicted to be involved in sterol biosynthetic process. Predicted to act upstream of or within cholesterol biosynthetic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in nuclear inner membrane. Predicted to be integral component of endoplasmic reticulum membrane. Is expressed in central nervous system; gut; and liver. Orthologous to human TM7SF2 (transmembrane 7 superfamily member 2).

Ensembl:

ensembl_id ENSDARG00000032816

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004203 False 1601 mRNA 0.45 11 26972755 26978376
TCONS_00004204 False 1050 mRNA 0.47 8 26973063 26977197
TCONS_00004205 False 1281 mRNA 0.48 10 26973140 26978193
TCONS_00004206 True 570 lncRNA 0.45 5 26973601 26976954

Neighbor

gene id symbol gene type direction distance location
XLOC_002185 vps51 coding upstream 325 26961965 ~ 26972430 (+)
XLOC_002184 frmd8 coding upstream 11546 26944418 ~ 26961209 (+)
XLOC_002183 CR450793.1 coding upstream 31205 26935155 ~ 26941550 (+)
XLOC_002182 rab1bb coding upstream 39047 26926654 ~ 26933708 (+)
XLOC_002180 ehbp1l1b coding upstream 47244 26871486 ~ 26925511 (+)
XLOC_002187 faub coding downstream 11719 26990095 ~ 26992003 (+)
XLOC_002188 BX248510.6 coding downstream 42788 27021164 ~ 27043164 (+)
XLOC_002189 wdr74 coding downstream 74266 27052642 ~ 27058986 (+)
XLOC_002190 NA coding downstream 83385 27061761 ~ 27064405 (+)
XLOC_002191 ehd1b coding downstream 89875 27068251 ~ 27093034 (+)
XLOC_002181 NA non-coding upstream 89616 26882702 ~ 26883139 (+)
XLOC_002175 NA non-coding upstream 185970 26786369 ~ 26786785 (+)
XLOC_002174 CR545465.1 non-coding upstream 201078 26766385 ~ 26771677 (+)
XLOC_002167 NA non-coding upstream 343473 26628793 ~ 26629282 (+)
XLOC_002164 NA non-coding upstream 408234 26564221 ~ 26564521 (+)
XLOC_002193 NA non-coding downstream 190750 27169126 ~ 27198982 (+)
XLOC_002195 NA non-coding downstream 1225388 28203764 ~ 28246420 (+)
XLOC_002196 CU207388.1 non-coding downstream 1274302 28252678 ~ 28252795 (+)
XLOC_002199 NA non-coding downstream 1464533 28442909 ~ 28455085 (+)

Expression


Co-expression Network