XLOC_002184 (frmd8)


Basic Information

Item Value
gene id XLOC_002184
gene name frmd8
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 26944418 ~ 26961209 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004200
CGCTGTTTTAAGAACATTATCCAGCTGCGCTGCTGCTGCCGTCATACTCGTAGCTCTTTTATGTAACTTAATCCTTCTAAACATTGATGCTTTcggtttgtttttaacaaaaaacgAGCTTCTGAATCGAAGGAGAGTGTCTCGATGGAGGGAGATGATGGCGACTTCCCCCCTGAGCCATCAGAACATTCCCTTTCCCAGCGAGGAAGTGTGGCTTCCTCAGTCACCAGAGCTCAGGATTTGTTGGTGTACTTGGCTAATGACAGTGCAGTGCACTTGACTCTGGAGGGTCTCGGTTGCATGAATGCGCAGGAGCTCGGCCGCAGTGTTAGGGAGGCCCTCAACATTCCCAACTCCGCTGCTGATGTGTTCGCTTTCTGGTTCTGCTCTCCTTTGCTTGAGCTGCAGTTGAAGCCGAAACATCTGCCTTACAAGCTGTGTCGTCAGTGGCAGGACCTGCTGTACCGCTTTACCGAGGCCCCTACAGAAGACATTTCTTTAGATGAGCCAAGTCTGCTATTCAAACGAAGTGTTTTTTATCCACGGGCAAAAGAACTTCAGATTGAAGATGAAGGAGTGTTGAGACTGCTTTATGATGAAGCAAAGATGAACATCTTGGAGGGTCGGTACCCATGTGACCCAGAACACTGGCTGACACTGGGTGCATTGTCCTGTGCCATAGAGTTAGGGACTGAACTAGACGACCAGGCTCTCACAGCAGCAATCAGAGAGAAGAAGCTGTCCTCATTCCTTCCAGCCCATGCGGCTCTAGGAGGAGGAGGTTTTCTGTCCACACTTCGGGGGAGAGGCGGGAGGAATGCAGAGATGGAGCAAAACCTTGTAAAGGAGTGTCGTTCAGTCTGCTCCTCTGCTGCTAGCGGCTCCAGCCAGGAGCCCATCGCTCTGCTGCGCCAGTACCTCAGGAGCTGCCACAACCTGCCTTACTATGGATGTGCTTTTTTCGCGGGTGAGATCGATAAGCCAGCTCAGGGCCTCCTTCACAGAGGTGGGCGTAAGGCTGTGAGTGTGGGCATCAGTCTGGAAGGAGTGTATGTCATGGATGTGAAAGAGAAGCATGTCCTTTTGGGGCTGAAGTTCACTGAGCTTTCCTGGGATCACAGCTATCCAGAGACAGAGGGAGACTCGCATATTCTCTGGCTGGAGTTTGATGGGGAGGAAGCTGGCACCCCTGTCAATAAGTTATTAAAGATTTACTCAAAGCAGGCTGAACTTATGAGTGGTCTTATCGAGTTTTGTGTGGAGTTACGCTCTGTTAGTGAGTCAGCAGCCACAGGTACAGACGGTGAGGTCACGCCTTCCCATGAACCTACGAGTCCAGAAACCAACAACAAAACCAGAGAGCGACGGCAGGGGAAACTGCGCAGACAGAACAGTGTGGTCTGTAGCCGAGTCCATTCCCTGAGCACCATCAACTATGTTGATGACGGCAAAGAAATCAAACGTTTGAAACCCAAAAGAGCAGCTTCTTTCTTTACAAGGCAAGCGCAGCCTCCCACTTACTCTGCTGTTCAGGTGACTGAAAGTTTAGAGCAAGGGTGAACCCAGGCCTCAACACTGCCCTCTTCTGCCCGGTGACCAAAACTACATCTGTCCATTGAGATTCTCAGAGACGCAGTGCAAAACCATCTGAATGGACAGATCGGACCAAGATCACAGACCGAAGAGCTGAACCACTATTTATAGATGATTTGTGCATGATGTCGCAAGTTTAAGTTAAAGCTTTTTCTCTGTTGGCTGTTAAAAAATAAGAATGTGAAATTAAGTTTTCTTTTCCGTCAAACATTTTGGTGTAAGAGCAAGGCTAAGGGAAGCGATCTGAAAGCTCTGGGTCGGTCACTGTTCTGAATGTAGATTCTACTATGCAACCATCAAACCAAACTACATCCCAGTGGCTGTACATCAATAATTCCTCACTTTGATCCACTAATACTGCTAAAACCAGACCTGCTGCACCAAAGGAAACAATCAAAGCCTTTAGTATAGGTTGTAAAACTCCTATATGCAAAACCAGCGCTGCAGTTTGTGGTAAAGCATTGCAATGACAGCATAAAGTGAGATTCTGAATGTGTAAAGTTCTTTTCTGTCCATGTTTGCATATGCAGACTTCAGACTTCTACTGAGCAGCAGGACAGATGTGAGTTCTGTTAAATCATGGCGATAGGTTGAGATTGTTCACTAGCTTGTTGCTCAGGAGAATCATGCCTTTCTGATGGAGTGCactgtaatgcactgcagaaaACAATCCAGGTGATTTGTTAGCATAATCTGCATTTGTAAAGCAGAGAGAATGTTAATACATGAAATTACGAGATGATTGGAGGCTTGATCAATCAATGACAATGTACGTCTGCTTTTCAATTTCCTGATGCTTTTCAAATGTATGAAACTCTAAGCATACTGTATTTTCTTGTCTTTAAGAATTTGAATGTACTGAATCTCTGAATATTTTTAGAAAAGTAATGGTAACACAGGGCACAGCtttaaagaatagttcacccaaaaacaaaaaagatattttgaagaatgctggttgctgacaCATATCGACCTCTATGGAATAAATGACTTAGTCAATGGATGCTTGCAACCAGCATTTATCACAATATCttgtgtgttaaacagaaaaacaacTTAAGTAAAATTAATTCTGATTTTATAACTTGGAATTGCGTCTGTATAACTCACTcgttgtgactttataactcagaattctgaattTATGActcggaattgtgactttataactcagaattgtgactttataactctgaattcttgctttataactcagaattctgtctttataacttggaattcggactttataactcggaattgcagCTGTATCAcacggaattctgactttataactcagaatttttgtctttataactcagaaatctaactttataactcagaattgcggtTGTATAACTCGAAATTCTGTCTTtaaaactcagaattctgactttataactcggaattgcaacTGTAACTCAgaaatctgactttataactcgggaATTCTGACCAACTTGGAATTGCGACTATAACTTGGAATTCTCTTTATAACTTGAAATTGTGACTAATTCAGAATGCTGTTTTTATAACTTGGAATAGTGACTATATAAATcgtaattttgactttataactcagaattctgttTTTATAACTTAGAATTGCTACTTTACAACTCAGAATAAAGTCGCATTTCTGAgttataaaaacagaatttagaTTTAATGATGAACTATCTCTTAAACTTCTGATCAGTACAAAACATCTTGTTTGATCTGGTAACGGAAGCGGCATGCTAATTATCGGGCGTCATCTGATCACCAGCCTCCAGTTACCTGCCCTGTGTCATTATTACCAAGCAGTTCATGGTTCTGATAGTCTGAATTGTGTGTAATTACTACATTATTGAAATTACGCATTCTGTTTTGGTATTAATGTCAATGTGCTGCTTATTTACAGATGAACTAAATGTTCATGTATCTGTAAACGCTTAATGTCAAGTCCTGTTGCCAGGTCTTTACTTACCACATCTCTGTATATTTATCCATGCATGACGCATCTGTTGTCTTAAATTGATTTTGTGGTGTGCATGTTTTTGTACATGTTTCCTTATCCATTTATACACTTGTAAGAAGAAAACTTTAACCTTTTGCATCACGTGCTGAACTGTGAAAGAAAAACGGACAGCTGCATGGTGTAAAATGAACAGTACACACTGACTCATCACCCTGCATTTCTGTATTCATCATTTATACTAGAATGCTTAATCCCAGATCATCTGTGCTATTGTAAAGTCATTTTTTCCACTCTAAATTGAATGCAATGTTTATATTGTAGTCTGAACATCTGTCATGCACTTATGCACATACTAACAAAGCTGTAGATAGTCACGTCTGTGTTTTGGAAATACAAAGTTGTCAGTACTATTTTAAAGTGCCTTTTTTAACATTTGatctgtttatgttgttttgctgtCATCTGTCTTTTGAAATTGTATTTCCACTATCTTttgttgtttgtgatgttttctATACCAATTTCACTACCAAACCTTTGTGACTGTAAAATTAAAGAAATCCATTTATATGCAGCATTAAACTTTTTATTCCTGCTTTGTACTAACCGGCATAACTATCAGTGAATCATTTTCTGTATAATGTATTTTGtaatgatgttttatttaatctttacctGCAACAAGGTCTTTGATGTGTTGAATCTTGAGGAgaaaaatgatgaaaataaatttaatgaCTAAA
>TCONS_00004201
ATGGAGGGAGATGATGGCGACTTCCCCCCTGAGCCATCAGAACATTCCCTTTCCCAGCGAGGAAGTGTGGCTTCCTCAGTCACCAGAGCTCAGGATTTGTTGGTGTACTTGGCTAATGACAGTGCAGTGCACTTGACTCTGGAGGGTCTCGGTTGCATGAATGCGCAGGAGCTCGGCCGCAGTGTTAGGGAGGCCCTCAACATTCCCAACTCCGCTGCTGATGTGTTCGCTTTCTGGTTCTGCTCTCCTTTGCTTGAGCTGCAGTTGAAGCCGAAACATCTGCCTTACAAGCTGTGTCGTCAGTGGCAGGACCTGCTGTACCGCTTTACCGAGGCCCCTACAGAAGACATTTCTTTAGATGAGCCAAGTCTGCTATTCAAACGAAGTGTTTTTTATCCACGGGCAAAAGAACTTCAGATTGAAGATGAAGGAGTGTTGAGACTGCTTTATGATGAAGCAAAGATGAACATCTTGGAGGGTCGGTACCCATGTGACCCAGAACACTGGCTGACACTGGGTGCATTGTCCTGTGCCATAGAGTTAGGGACTGAACTAGACGACCAGGCTCTCACAGCAGCAATCAGAGAGAAGAAGCTGTCCTCATTCCTTCCAGCCCATGCGGCTCTAGGAGGAGGAGGTTTTCTGTCCACACTTCGGGGGAGAGGCGGGAGGAATGCAGAGATGGAGCAAAACCTTGTAAAGGAGTGTCGTTCAGTCTGCTCCTCTGCTGCTAGCGGCTCCAGCCAGGAGCCCATCGCTCTGCTGCGCCAGTACCTCAGGAGCTGCCACAACCTGCCTTACTATGGATGTGCTTTTTTCGCGGGTGAGATCGATAAGCCAGCTCAGGGCCTCCTTCACAGAGGTGGGCGTAAGGCTGTGAGTGTGGGCATCAGTCTGGAAGGAGTGTATGTCATGGATGTGAAAGAGAAGCATGTCCTTTTGGGGCTGAAGTTCACTGAGCTTTCCTGGGATCACAGCTATCCAGAGACAGAGGGAGACTCGCATATTCTCTGGCTGGAGTTTGATGGGGAGGAAGCTGGCACCCCTGTCAATAAGTTATTAAAGATTTACTCAAAGCAGGCTGAACTTATGAGTGGTCTTATCGAGTTTTGTGTGGAGTTACGCTCTGTTAGTGAGTCAGCAGCCACAGGTACAGACGGTGAGGTCACGCCTTCCCATGAACCTACGAGTCCAGAAACCAACAACAAAACCAGAGAGCGACGGCAGGGGAAACTGCGCAGACAGAACAGTGTGGTCTGTAGCCGAGTCCATTCCCTGAGCACCATCAACTATGTTGATGACGGCAAAGAAATCAAACGTTTGAAACCCAAAAGAGCAGCTTCTTTCTTTACAAGGCAAGCGCAGCCTCCCACTTACTCTGCTGTTCAGGTGACTGAAAGTTTAGAGCAAGGGTGAACCCAGGCCTCAACACTGCCCTCTTCTGCCCGGTGACCAAAACTACATCTGTCCATTGAGATTCTCAGAGACGCAGTGCAAAACCATCTGAATGGACAGATCGGACCAAGATCACAGACCGAAGAGCTGAACCACTATTTATAGATGATTTGTGCATGATGTCGCAAGTTTAAGTTAAAGCTTTTTCTCTGTTGGCTGTTAAAAAATAAGAATGTGAAATTAAGTTTTCTTTTCCGTCAAACATTTTGGTGTAAGAGCAAGGCTAAGGGAAGCGATCTGAAAGCTCTGGGTCGGTCACTGTTCTGAATGTAGATTCTACTATGCAACCATCAAACCAAACTACATCCCAGTGGCTGTACATCAATAATTCCTCACTTTGATCCACTAATACTGCTAAAACCAGACCTGCTGCACCAAAGGAAACAATCAAAGCCTTTAGTATAGGTTGTAAAACTCCTATATGCAAAACCAGCGCTGCAGTTTGTGGTAAAGCATTGCAATGACAGCATAAAGTGAGATTCTGAATGTGTAAAGTTCTTTTCTGTCCATGTTTGCATATGCAGACTTCAGACTTCTACTGAGCAGCAGGACAGATGTGAGTTCTGTTAAATCATGGCGATAGGTTGAGATTGTTCACTAGCTTGTTGCTCAGGAGAATCATGCCTTTCTGATGGAGTGCactgtaatgcactgcagaaaACAATCCAGGTGATTTGTTAGCATAATCTGCATTTGTAAAGCAGAGAGAATGTTAATACATGAAATTACGAGATGATTGGAGGCTTGATCAATCAATGACAATGTACGTCTGCTTTTCAATTTCCTGATGCTTTTCAAATGTATGAAACTCTAAGCATACTGTATTTTCTTGTCTTTAAGAATTTGAATGTACTGAATCTCTGAATATTTTTAGAAAAGTAATGGTAACACAGGGCACAGCtttaaagaatagttcacccaaaaacaaaaaagatattttgaagaatgctggttgctgacaCATATCGACCTCTATGGAATAAATGACTTAGTCAATGGATGCTTGCAACCAGCATTTATCACAATATCttgtgtgttaaacagaaaaacaacTTAAGTAAAATTAATTCTGATTTTATAACTTGGAATTGCGTCTGTATAACTCACTcgttgtgactttataactcagaattctgaattTATGActcggaattgtgactttataactcagaattgtgactttataactctgaattcttgctttataactcagaattctgtctttataacttggaattcggactttataactcggaattgcagCTGTATCAcacggaattctgactttataactcagaatttttgtctttataactcagaaatctaactttataactcagaattgcggtTGTATAACTCGAAATTCTGTCTTtaaaactcagaattctgactttataactcggaattgcaacTGTAACTCAgaaatctgactttataactcgggaATTCTGACCAACTTGGAATTGCGACTATAACTTGGAATTCTCTTTATAACTTGAAATTGTGACTAATTCAGAATGCTGTTTTTATAACTTGGAATAGTGACTATATAAATcgtaattttgactttataactcagaattctgttTTTATAACTTAGAATTGCTACTTTACAACTCAGAATAAAGTCGCATTTCTGAgttataaaaacagaatttagaTTTAATGATGAACTATCTCTTAAACTTCTGATCAGTACAAAACATCTTGTTTGATCTGGTAACGGAAGCGGCATGCTAATTATCGGGCGTCATCTGATCACCAGCCTCCAGTTACCTGCCCTGTGTCATTATTACCAAGCAGTTCATGGTTCTGATAGTCTGAATTGTGTGTAATTACTACATTATTGAAATTACGCATTCTGTTTTGGTATTAATGTCAATGTGCTGCTTATTTACAGATGAACTAAATGTTCATGTATCTGTAAACGCTTAATGTCAAGTCCTGTTGCCAGGTCTTTACTTACCACATCTCTGTATATTTATCCATGCATGACGCATCTGTTGTCTTAAATTGATTTTGTGGTGTGCATGTTTTTGTACATGTTTCCTTATCCATTTATACACTTGTAAGAAGAAAACTTTAACCTTTTGCATCACGTGCTGAACTGTGAAAGAAAAACGGACAGCTGCATGGTGTAAAATGAACAGTACACACTGACTCATCACCCTGCATTTCTGTATTCATCATTTATACTAGAATGCTTAATCCCAGATCATCTGTGCTATTGTAAAGTCATTTTTTCCACTCTAAATTGAATGCAATGTTTATATTGTAGTCTGAACATCTGTCATGCACTTATGCACATACTAACAAAGCTGTAGATAGTCACGTCTGTGTTTTGGAAATACAAAGTTGTCAGTACTATTTTAAAGTGCCTTTTTTAACATTTGatctgtttatgttgttttgctgtCATCTGTCTTTTGAAATTGTATTTCCACTATCTTttgttgtttgtgatgttttctATACCAATTTCACTACCAAACCTTTGTGACTGTAAAATTAAAGAAATCCATTTATATGCAGCATTAAACTTTTTATTCCTGCTTTGTACTAACCGGCATAACTATCAGTGAATCATTTTCTGTATAATGTATTTTGtaatgatgttttatttaatctttacctGCAACAAGGTCTTTGATGTGTTGAATCTTGAGGAgaaaaatgatgaaaataaatttaatgaCTAAATATTGTCCATGTTGTCTTATACTAGCTTTTTTggtaaaatttgttttaattatgcaataatattgtattaattgtcataaattgtttataaaaaaaacatttggtaaCATTATCAAAGTGAAGCCAAAATTTCCCATCTATGGCTGCTGTCATCTTTTGATTTGAGCAATGAAGTCTACTTAATTTGGAGCCGAAGTCTGCGCAGAATTGatcttaaaggtcctgtgaagtgctttgaaatatgcatttttattagatgtttgacgtaatctttactgaaacacgaagagagggtgggacttagtgtagctcctcccctttttgttttttcagctctgcctgtgagagtggttgagctcaagtgcatcaaatgaaaagtgtcttgaaggggacggggcttgtcagatactagagagcatttgattggtcagaagatttgataagaaactAAAGTATGTGGTGACATGAAGAAAGGGGTCTGGCAGactcggtgcagatgcaatctgagctgcatccaatgctttttaatgcgctcacccaaccc

Function

symbol description
frmd8 Acts upstream of or within anterior/posterior pattern specification; negative regulation of Wnt signaling pathway; and regulation of canonical Wnt signaling pathway. Predicted to be located in cytoskeleton; cytosol; and membrane. Predicted to be active in plasma membrane. Is expressed in otic vesicle and post-vent region. Orthologous to several human genes including FRMD8 (FERM domain containing 8).

GO:

id name namespace
GO:0030178 negative regulation of Wnt signaling pathway biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0060828 regulation of canonical Wnt signaling pathway biological_process
GO:0005829 cytosol cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-090812-5 Acts upstream of or within anterior/posterior pattern specification; negative regulation of Wnt signaling pathway; and regulation of canonical Wnt signaling pathway. Predicted to be located in cytoskeleton; cytosol; and membrane. Predicted to be active in plasma membrane. Is expressed in otic vesicle and post-vent region. Orthologous to several human genes including FRMD8 (FERM domain containing 8).

Ensembl:

ensembl_id ENSDARG00000073696

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004200 False 4299 mRNA 0.41 10 26944418 26960665
TCONS_00004201 True 4699 mRNA 0.40 9 26944978 26961209

Neighbor

gene id symbol gene type direction distance location
XLOC_002183 CR450793.1 coding upstream 2868 26935155 ~ 26941550 (+)
XLOC_002182 rab1bb coding upstream 10710 26926654 ~ 26933708 (+)
XLOC_002180 ehbp1l1b coding upstream 18907 26871486 ~ 26925511 (+)
XLOC_002181 NA coding upstream 61279 26882702 ~ 26883139 (+)
XLOC_002179 fam89b coding upstream 107245 26834985 ~ 26837173 (+)
XLOC_002185 vps51 coding downstream 756 26961965 ~ 26972430 (+)
XLOC_002186 tm7sf2 coding downstream 11546 26972755 ~ 26978376 (+)
XLOC_002187 faub coding downstream 28886 26990095 ~ 26992003 (+)
XLOC_002188 BX248510.6 coding downstream 59955 27021164 ~ 27043164 (+)
XLOC_002189 wdr74 coding downstream 91433 27052642 ~ 27058986 (+)
XLOC_002175 NA non-coding upstream 157633 26786369 ~ 26786785 (+)
XLOC_002174 CR545465.1 non-coding upstream 172741 26766385 ~ 26771677 (+)
XLOC_002167 NA non-coding upstream 315136 26628793 ~ 26629282 (+)
XLOC_002164 NA non-coding upstream 379897 26564221 ~ 26564521 (+)
XLOC_002190 NA non-coding downstream 100552 27061761 ~ 27064405 (+)
XLOC_002193 NA non-coding downstream 207917 27169126 ~ 27198982 (+)
XLOC_002195 NA non-coding downstream 1242555 28203764 ~ 28246420 (+)
XLOC_002196 CU207388.1 non-coding downstream 1291469 28252678 ~ 28252795 (+)
XLOC_002199 NA non-coding downstream 1481700 28442909 ~ 28455085 (+)

Expression


Co-expression Network