Fish Transcriptome and Expression Database

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model fish

XLOC_002188 (BX248510.6)

Basic Information

Item	Value
gene id	XLOC_002188
gene name	BX248510.6
gene type	coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007121.7
NCBI id	CM002894.2
chromosome length	45420867
location	27021164 ~ 27043164 (+)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004208
TTGTTGCTGTATCATGTCTGGCACAAGGTACATCAAcctactatTCCAGCAGCCGTCATCTTTAaaccaatctccatcattagcatcgatgttATTGAGAACTATTGTGAGAAGagctttacaaTcaaattgaactttttttATTTATCCTATTTCAAatatttaTTTGCAATAGTATATttcttacacattttttaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000114036

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00004208	True	198	mRNA	0.31	9	27021164	27043164

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_002187	faub	coding	upstream	29161	26990095 ~ 26992003 (+)
XLOC_002186	tm7sf2	coding	upstream	42788	26972755 ~ 26978376 (+)
XLOC_002185	vps51	coding	upstream	48734	26961965 ~ 26972430 (+)
XLOC_002184	frmd8	coding	upstream	59955	26944418 ~ 26961209 (+)
XLOC_002183	CR450793.1	coding	upstream	79614	26935155 ~ 26941550 (+)
XLOC_002189	wdr74	coding	downstream	9478	27052642 ~ 27058986 (+)
XLOC_002190	NA	coding	downstream	18597	27061761 ~ 27064405 (+)
XLOC_002191	ehd1b	coding	downstream	25087	27068251 ~ 27093034 (+)
XLOC_002192	cxadr	coding	downstream	52879	27096043 ~ 27158240 (+)
XLOC_002193	NA	coding	downstream	125962	27169126 ~ 27198982 (+)
XLOC_002181	NA	non-coding	upstream	138025	26882702 ~ 26883139 (+)
XLOC_002175	NA	non-coding	upstream	234379	26786369 ~ 26786785 (+)
XLOC_002174	CR545465.1	non-coding	upstream	249487	26766385 ~ 26771677 (+)
XLOC_002167	NA	non-coding	upstream	391882	26628793 ~ 26629282 (+)
XLOC_002164	NA	non-coding	upstream	456643	26564221 ~ 26564521 (+)
XLOC_002195	NA	non-coding	downstream	1160600	28203764 ~ 28246420 (+)
XLOC_002196	CU207388.1	non-coding	downstream	1209514	28252678 ~ 28252795 (+)
XLOC_002199	NA	non-coding	downstream	1399745	28442909 ~ 28455085 (+)

Expression

Co-expression Network