XLOC_002187 (faub)


Basic Information

Item Value
gene id XLOC_002187
gene name faub
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 26990095 ~ 26992003 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004207
GCAGAACACTTTCTAGAAAAGCGAAATACTTCAGTTCAGGCTGTTCATGTCGTGTTTTGTGCTCGTACGAATCCAAATCGATATCTACTGACCATCATGCAGTTGTTTGTTCGCGGCCAGAGTTTGCACTCTGTTCAGCTGAATGGGTCAGAGACTGTTGCCCATATCAAGGCTCAGATTGAAGCTTTGGAAGGTCTCGCCTGTGACGATCAGATCATTTCTCTCAGTGGGATTCCCCTTGAGGATGACGCTCTGATCTGTCAGTCTGGGATCGAGGAGTTCAACACTCTTGAGGTCTCATCAAGGCTTTTAGGAGGCAAAGTTCACGGTTCCCTGGCTAGAGCAGGAAAAGTCAGAGGACAAACTCCTAAGGTGGATAAGCAGGAGAAGCGCAAGAAAAGGACCGGCCGGGCAAAGAGAAGAATTCAGTACAACAGGCGCTTTGTCAATGTTGTCCCGACGTTTGGCAAAAAGAAAGGACCAAATGCCAACTCATAATGTTTTCAATATTTGCTACATTATTGAGCATTCCTGATGGGAAGACAATATAAAATATAGTGCAATATAAAATGAGCCTGTGCACTTTGGTCTAGAATTTATATTTTGTGAGATGAAGTTTAATGTAgtgtgaaataaaatgaaactgtAAATCACTGGGAATCCTTAATGGTGTTTCTGGCAAGAATGAGGTTTTgtaaattgcaaataaaaaacatttaatcaaagaCACTTGTCATTTGAATACGATTTAAATTCACAGCATCAACCCAATGTGGCTTTGCTGATTTAATAAAAGAGTCCATGACAATGTAGAAGATCAAGTCCAGAGTCATTTGCCTGTATCCTTCATTCCCACTCTTTCATCGATCACTAAGAGGCCTGAGGTGATCAAAC

Function

symbol description
faub Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit. Orthologous to human FAU (FAU ubiquitin like and ribosomal protein S30 fusion).

GO:

id name namespace
GO:0006412 translation biological_process
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050417-416 Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit. Orthologous to human FAU (FAU ubiquitin like and ribosomal protein S30 fusion).

Ensembl:

ensembl_id ENSDARG00000043663

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004207 True 894 mRNA 0.41 5 26990095 26992003

Neighbor

gene id symbol gene type direction distance location
XLOC_002186 tm7sf2 coding upstream 11719 26972755 ~ 26978376 (+)
XLOC_002185 vps51 coding upstream 17665 26961965 ~ 26972430 (+)
XLOC_002184 frmd8 coding upstream 28886 26944418 ~ 26961209 (+)
XLOC_002183 CR450793.1 coding upstream 48545 26935155 ~ 26941550 (+)
XLOC_002182 rab1bb coding upstream 56387 26926654 ~ 26933708 (+)
XLOC_002188 BX248510.6 coding downstream 29161 27021164 ~ 27043164 (+)
XLOC_002189 wdr74 coding downstream 60639 27052642 ~ 27058986 (+)
XLOC_002190 NA coding downstream 69758 27061761 ~ 27064405 (+)
XLOC_002191 ehd1b coding downstream 76248 27068251 ~ 27093034 (+)
XLOC_002192 cxadr coding downstream 104040 27096043 ~ 27158240 (+)
XLOC_002181 NA non-coding upstream 106956 26882702 ~ 26883139 (+)
XLOC_002175 NA non-coding upstream 203310 26786369 ~ 26786785 (+)
XLOC_002174 CR545465.1 non-coding upstream 218418 26766385 ~ 26771677 (+)
XLOC_002167 NA non-coding upstream 360813 26628793 ~ 26629282 (+)
XLOC_002164 NA non-coding upstream 425574 26564221 ~ 26564521 (+)
XLOC_002193 NA non-coding downstream 177123 27169126 ~ 27198982 (+)
XLOC_002195 NA non-coding downstream 1211761 28203764 ~ 28246420 (+)
XLOC_002196 CU207388.1 non-coding downstream 1260675 28252678 ~ 28252795 (+)
XLOC_002199 NA non-coding downstream 1450906 28442909 ~ 28455085 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000304_12556446_12557806 FAUB, UBIM, FAU coding CI01000304 null 12556446 ~ 12558076 (+)