CI01000304_15723867_15741978


Basic Information

Item Value
gene id CI01000304_15723867_15741978
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 15723867 ~ 15742863 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_15723867_15741978.mRNA
ATGGCATGGCCCTGTATCTCCAGAGCCTGCTGTATGGCTCGGTTCTGGAACCAGCTAGACAAGGCCGACATTGCGGTGCCGTTGGTTTTCACCAAGTACTCGGACGTGTCCGAAATGCAGCATCTTCACCTGCAGCAGCCCGCCCAGAAGGTCGCCATAGAAACGCAGCCGCTTCACAACGACCACGACGCGGTGACCAAAGGACCTCCAGCCCGGGATGAGAACATCAGCGGATCTGTGATGCGCCAGGACTTTAAACACTGGAATGTTCGCCCGGAGCCCAGCTGCAAGCCCAAGAACGAGTATCATGGCCCTGAGATCCCTTTTAACAACGAGACCCAGTATCAGAAGGACTACAAAGCCTGGCCTATCCCAAAGAGGGGAGATCATCCTTGGATCCCCAAACCCTCTCCGACCATCTCAGTGGGCAATGACCGCATCCCTGATAGATCCAAACACTCAGAGATGATGGACACTGGGGTGGAAAAGAGTCAGATTGCTGACAAGGTGCAAGAGAAGGAGATCCTGTCTAGTGGAAGGAAAAAGAGGCAAGCCAAGAAAGTGACCATGGTTTCTGAAAGCAAAGCTGACATGAAGTTGGACGGGCAGAGCATAGGGGATGCCACCACGACAGAGGGAAAAGGGAGGGCAGCTGTGGATGCCCTCAACCGGCAGATCAAACAAGAAGTCACCTCTGGCAGCTCCTACAGATCAATATGCTTTGGTCTGCAATTTATCTCTGTACGATATATTAGTCGTGCACAAAATCTTGGAAATGCTGAGACGTCCTTACATAATACTTCGCCACCGAAGGATCCAGCAGATGTTACGAATCTACAGGCCACGTTCGCTTATCAGAGCGACGTTCTCAAGGAGTACCGTGATCAACTGGCTAAAGCTCAAGTGGCTAATGACTACCTCACTCAGTATTTGCGATCGCTATCACCGCCTATGCCCAGAAAGGGAAGTGACTTTGATTCTGACGAGAAGAAGTGTGCATTCCTCATGTCATTGCTAACGGGCAAAGCGATCGAGTGGGCCGCTGCAGTTTGGGAAACTGATCGCTTGTTCCAAACATCCTACCCGTACTTCATAAAACAACTTAGAGATGTGTTTGAATACCCAGCAGGGGGCAAGGATGTTTCCACTCGTTTAATGCAACTAACTCAAGGCCGCAAATCCGCCGCTGAATATGCTATTGAGTTCAGAACGCTTGCTGCTCAGAGTGGTTGGAACGATGTGTCACTCAAGGCCCTGTTTCGTCGCAGTTTGAATATGGAGTTACAGGCAGAGCTTGCATGTAAGGGTGAGGAGCACTCCTTTTCTGAGAATGAGTTCAAAGCCTACACAGATGTAAAATCTGTGAAGGTCACCAGGGCCCAGTCTCAGTATAAGATTCCCGATGAGAGAACTGCTCTGGAGACCAGCTACAGCGCCACCTACAGGGGCTACCAGGCCAATCTGCAGCCAGATGACAACAAGGCCCTGGAGAGGAGGAGGATACGCACACTGTATCATGAACCTTATAGAGAGACCAGTAAGGTAGAGAAAACCAGTCTTCCTCGCTCTAAACCGAAAAAGAGCACCACCACATCTGCCACACCTGGCAAACCGCTGAAGAAGTCCAAGGAGAAGCAGGCAACGTCTGTGCGCGGTTCAAAGAAGAAGAGCTCCGAGAACCAGCCGGAGAGCAGAGCGGCGCAGGGCGACAAGGAGAAAAGTAAAGAGATCAACAACAAACTGGCTGAGGCGAAAGAGTAAAAACCATTGCAATTCTTCTCTCATTTATTCTCTTCCTGAAAGGGTGAAAGCTGAACGAAGGCTGCAAAATTATTTAATAAGAGGTTCTCATTCCTTTACTGTTCTATCCATTGCTTCCCCTTCTCTCTGTCTCTCTCTCTATCTCTATCTATCTGATGCACCTCTCGTTTTATTCCTTACTGTATATTTCCAATACCCGCCACCTCTCTCTCTCTCTCTTACTCTTTTTCTTTCTCTTTGAGAGGTCAGTGGGCTGTTTTTAGAACATTTTCAGGGTTGAAATTTGATGTTTTTCTTCTATTTTGCCTCGCAATCTCGCCAGTAATATCAAAGCGTTTGCATTTACTATAGCTCCACCCACTCTCCTCATCTCCACGACAAGGTTTCTATGGCAACCACTCTACTGGTTGGCTAGTGGATGCTCTTATCTTGCATGGAGCCATTGGCTAGAAGCACAGTATGTTTTACTTCCCATCAGATGCACAGACTGGTGGTTTTCATTTATCAAGGGTTATACAATCAAGCTAATTTGTATCCGATAAGCCTTTTGAAATCAAATGTAAATTAGGCAACATATAAAAGCCACAAAGACCAATTTCCCAGTCAAAAAAATCTTTGATAAATGTGCATCTTTGATTTTAAAACTATATTGATCTATTTCCTGCTTGCGTTGCCTGTTTTATGTAGTCAAACACCCCCCAAGCTCCCAAGTGATGTCAAATCACTTTGGTCCTGTGATTATTTTAACTATTTTATTTGTTTTCTTGCTCATTTTTAGAACCATTCCATCATGAAATTGTTGTTGAATCATTACAGGAACAGAATATCTCCAAATAGCTTAAAGGGAACATCAGTATCTCCAAAAAGGCATCTGTCAAGGTCATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_15723867_15741978.mRNA True 2646 mRNA 0.47 6 15723867 15742863

Neighbor

gene id symbol gene type direction distance location
CI01000304_15500233_15509862 WNT11, WNT11.L, WNT11R coding upstream 213151 15500233 ~ 15510716 (+)
CI01000304_15483378_15486113 NA coding upstream 237481 15483378 ~ 15486386 (+)
CI01000304_15472687_15483327 NA coding upstream 240540 15472687 ~ 15483327 (+)
CI01000304_15467093_15471138 PRKRIRA coding upstream 252385 15467093 ~ 15471482 (+)
CI01000304_15462162_15465511 NA coding upstream 258356 15462162 ~ 15465511 (+)
CI01000304_15776859_15777750 ZBTB21 coding downstream 33996 15776859 ~ 15777768 (+)
CI01000304_15779082_15779951 ZBTB21 coding downstream 36219 15779082 ~ 15780105 (+)
CI01000304_15785399_15786785 RAD51C coding downstream 42536 15785399 ~ 15787028 (+)
CI01000304_15817532_15846675 PPM1E coding downstream 72913 15814649 ~ 15846892 (+)
CI01000304_15896045_15897082 NA coding downstream 153182 15896045 ~ 15897843 (+)
G427844 NA non-coding upstream 8746 15714842 ~ 15715121 (+)
G427843 NA non-coding upstream 9531 15713909 ~ 15714336 (+)
G427777 NA non-coding upstream 16470 15705318 ~ 15707397 (+)
G427776 NA non-coding upstream 20332 15622304 ~ 15703535 (+)
G427808 NA non-coding upstream 55997 15655415 ~ 15667870 (+)
G427915 NA non-coding downstream 66340 15809203 ~ 15812033 (+)
G427917 NA non-coding downstream 70240 15813103 ~ 15814423 (+)
G427904 NA non-coding downstream 98048 15840911 ~ 15851136 (+)
G427889 NA non-coding downstream 123303 15866166 ~ 15931957 (+)
G426828 NA other upstream 773275 14948890 ~ 14950592 (+)
G426312 NA other upstream 1392981 14330048 ~ 14330886 (+)
CI01000304_13578347_13595075 NA other upstream 2145020 13578049 ~ 13595097 (+)
G425718 NA other upstream 3284781 12436554 ~ 12436605 (+)
CI01000304_10555326_10571933 NA other upstream 5168163 10555216 ~ 10572164 (+)
G427860 NA other downstream 142591 15885454 ~ 15889591 (+)
G428017 NA other downstream 340367 16083230 ~ 16083714 (+)
CI01000304_16505174_16506124 NA other downstream 761999 16504764 ~ 16513625 (+)
CI01000304_16761621_16764983 EXOSC8 other downstream 1013083 16761372 ~ 16765057 (+)
CI01000304_17009769_17023302 ZDHHC20, ZDHHC20A other downstream 1267867 17009769 ~ 17023882 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_002236 map6a coding NC_007121.7 CM002894.2 32560667 ~ 32601380 (+)
bowfin (Amia calva) AMCG00016252 NA coding CM030122.1 CM030122.1 13655038 ~ 13675532 (-)