G427808


Basic Information

Item Value
gene id G427808
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 15655415 ~ 15667870 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU491236
TGAAAAGAAGAGAATTTGAAGATACAGTGAGTGTGGAAACACAAACAGAGGATTTTCTGCTAACAAGGGCATTGAGATACACAGAGAAGGGATAAAGCAGTGGGATTCGGGATCTCTAAATCCATCAAAACACAGGATACAAGAGCCGCCCGAGGACTTAATGACATATTTATGAGGATCTGTGTAACACAAGATACACAACGCTGAGGCCATTTGTGTTGAGTGACTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU491236 True 229 lncRNA 0.42 2 15655415 15667870

Neighbor

gene id symbol gene type direction distance location
CI01000304_15500233_15509862 WNT11, WNT11.L, WNT11R coding upstream 144699 15500233 ~ 15510716 (+)
CI01000304_15483378_15486113 NA coding upstream 169029 15483378 ~ 15486386 (+)
CI01000304_15472687_15483327 NA coding upstream 172088 15472687 ~ 15483327 (+)
CI01000304_15467093_15471138 PRKRIRA coding upstream 183933 15467093 ~ 15471482 (+)
CI01000304_15462162_15465511 NA coding upstream 189904 15462162 ~ 15465511 (+)
CI01000304_15723867_15741978 NA coding downstream 55997 15723867 ~ 15742863 (+)
CI01000304_15776859_15777750 ZBTB21 coding downstream 108989 15776859 ~ 15777768 (+)
CI01000304_15779082_15779951 ZBTB21 coding downstream 111212 15779082 ~ 15780105 (+)
CI01000304_15785399_15786785 RAD51C coding downstream 117529 15785399 ~ 15787028 (+)
CI01000304_15817532_15846675 PPM1E coding downstream 147906 15814649 ~ 15846892 (+)
G427752 NA non-coding upstream 80197 15574948 ~ 15575218 (+)
G427750 NA non-coding upstream 81427 15573669 ~ 15573988 (+)
G427749 NA non-coding upstream 86500 15568685 ~ 15568915 (+)
G427748 NA non-coding upstream 87112 15568094 ~ 15568303 (+)
G427746 NA non-coding upstream 88084 15567103 ~ 15567331 (+)
G427777 NA non-coding downstream 37448 15705318 ~ 15707397 (+)
G427843 NA non-coding downstream 46039 15713909 ~ 15714336 (+)
G427844 NA non-coding downstream 46972 15714842 ~ 15715121 (+)
G427906 NA non-coding downstream 72388 15740258 ~ 15741104 (+)
G427915 NA non-coding downstream 141333 15809203 ~ 15812033 (+)
G426828 NA other upstream 704823 14948890 ~ 14950592 (+)
G426312 NA other upstream 1324529 14330048 ~ 14330886 (+)
CI01000304_13578347_13595075 NA other upstream 2076568 13578049 ~ 13595097 (+)
G425718 NA other upstream 3216329 12436554 ~ 12436605 (+)
CI01000304_10555326_10571933 NA other upstream 5099711 10555216 ~ 10572164 (+)
G427860 NA other downstream 217584 15885454 ~ 15889591 (+)
G428017 NA other downstream 415360 16083230 ~ 16083714 (+)
CI01000304_16505174_16506124 NA other downstream 836992 16504764 ~ 16513625 (+)
CI01000304_16761621_16764983 EXOSC8 other downstream 1088076 16761372 ~ 16765057 (+)
CI01000304_17009769_17023302 ZDHHC20, ZDHHC20A other downstream 1342860 17009769 ~ 17023882 (+)

Expression


Co-expression Network