CI01000304_15500233_15509862 (WNT11, WNT11.L, WNT11R)


Basic Information

Item Value
gene id CI01000304_15500233_15509862
gene name WNT11, WNT11.L, WNT11R
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 15500233 ~ 15510716 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_15500233_15509862.mRNA
ATGAAGCGAATCTTCCCTTCTCTCCCGCTCTGTCTTCTCACATTCCTGCTCCTGTCTCAGCAGTGCACAGGAATCAAATGGCTGGCACTATCACAGACCACACAACACATCAACAAGACCCAGCACTGCAAGATGTTGCCAGGCCTCGTCTCCTCTCAGGCTCAGCTCTGTAGGAGTAACCTGGAACTCATGCAAACTATCATCCAAGCAGCACGGGAGGTTAAAAAGGTCTGCCAAAAGACCTTCTCAGACATGCGCTGGAACTGTTCCTCTATTGAAGCTCAAAAATTCCTCCCGGACCTGGAACGAGGAACGAGGGAGTCTGCATTTGTATACGCCCTCTCTGCAGCTGCTATAAGTCACACTATAGCACGGGCGTGCACCTCCGGAGATCTGAGGTTGTGCTCGTGTGGTCCAATTCCAGGGGAAATACCCGAGCCTGGGTACAGGTGGGGCGGCTGTGCTGATAACCTGCATTATGGTCTCCTCATGGGCTCCAAGTTTTCTGATGCCCCCATGAAGATGAAGAAGAAGTCTGGCTCACATGCCAACAAGCTGATGCATCTTCATAATAGCGAAGTGGGCAGACAGGCTTTGCGAGACGCTCTGGTCATGAAGTGCAAATGCCATGGTGTTTCTGGATCCTGCTCCATTCGGACCTGTTGGAGAGGCTTACAGGACCTGAAGGACATCGCTATGGACCTGAAGACCAAGTACTTGTCAGCCACTAAGGTCGTCCATCGGCCCATGGGCACACGCAAGCAACTCGTCCCCAAAGACATCGACATCCGGCCGGTCCGAGAGAATGAGCTGGTTTATCTGCAGAGTTCACCAGACTATTGCATGAGGAATGACAAGATGGGCTCTTTTGGTACTCAGGACAGGCAGTGCAATAAGACCTCAAGCGGCAGTGACAGCTGTGATCTGATGTGCTGTGGCAGAGGCTACAACCCTTATTCAGAGAGAGTGGTGGAGCGCTGCCACTGCAAATACCACTGGTGCTGCTACGTCACGTGCAAGAAGTGCGAGAGGACTGTGGAGAAATACGTGTGCAAATGAGTCCATCTCTGTGGTCGGCTATGATAATTGTGCTGACCCCCGGTCACACGTACCTATTCTCAGCTAAACTAATCTAAAGGAGATCTGGAATGCGCTCTACTCATTGTAACACAACTGGACTGACTTCTCATTCGAATTCCCAGACATGGTGGTTGAACGAGCTGAAAATGTCAAGACTTGATTCTCTTCTAGATATATTCAGCCTGGGTGTGGAGCATAACCTTTGTCTACCTGACTTACTTGGCCACAGATAACCAAAGCATGTTACCAACAAGGCTTACTTTTGTCTTATGCTTTTCCAGCTTGTATGCTTTTGAGAAGACATGGTTTATTTTTGGCTTTATGAACTTTTATAAAGAAATATCAACTCAGAAGCTGGACTTTATTTTTTTACTGCACAAATGAACATGGTTTTTGTTAAAAAAAAAAAAAAAAACAACAACACCCAGCTCACCGTCCTCAAGAGGATTTTTCCTCTGTTTTTTTTTAAACGTAAAAGCATATGCTCCTTTATCCAGATTTTAAGTCTATTTTCTTACACAGTACCTGGGTCCCTTTTTTATTTTTTTTAAAGGTACATTTTACCTATTTTTGGCAAGGCATTGATTTTAAGCACTCTTCTTAGAACCTTCAAAATTGCTTGACGTTCCAGAGGATTCCACATTCCAAGTTCTAAGGGATTCAGGCCTCAAAACTCAGATGGTACTTTACTTTCACCAGTTAAGACTGTTTAATAGACTGACAAGATAAAGAAAGTGCTGAACATGCAAAGGGAACTTCAAATGCGGCTCTTGGATGAGGGACTTTGCAATGGCTTCCATCTGTTGGTTGGTTACTTCAATTCTAGAGGGAGA

Function

symbol description
wnt11 Predicted to enable cytokine activity and frizzled binding activity. Acts upstream of or within embryonic morphogenesis; neuromast development; and pharyngeal system development. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in several structures, including cardiovascular system; fin; mesoderm; nervous system; and pharyngeal arch. Orthologous to human WNT11 (Wnt family member 11).

NR:

description
Wnt11r, partial

GO:

id name namespace
GO:0042056 chemoattractant activity molecular_function

KEGG:

id description
K01384 WNT11; wingless-type MMTV integration site family, member 11

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_15500233_15509862.mRNA True 1913 mRNA 0.46 5 15500233 15510716

Neighbor

gene id symbol gene type direction distance location
CI01000304_15483378_15486113 NA coding upstream 13847 15483378 ~ 15486386 (+)
CI01000304_15472687_15483327 NA coding upstream 16906 15472687 ~ 15483327 (+)
CI01000304_15467093_15471138 PRKRIRA coding upstream 28751 15467093 ~ 15471482 (+)
CI01000304_15462162_15465511 NA coding upstream 34722 15462162 ~ 15465511 (+)
CI01000304_15423818_15456305 LHFP coding upstream 43352 15421611 ~ 15456881 (+)
CI01000304_15723867_15741978 NA coding downstream 213151 15723867 ~ 15742863 (+)
CI01000304_15776859_15777750 ZBTB21 coding downstream 266143 15776859 ~ 15777768 (+)
CI01000304_15779082_15779951 ZBTB21 coding downstream 268366 15779082 ~ 15780105 (+)
CI01000304_15785399_15786785 RAD51C coding downstream 274683 15785399 ~ 15787028 (+)
CI01000304_15817532_15846675 PPM1E coding downstream 305060 15814649 ~ 15846892 (+)
G427723 NA non-coding upstream 9708 15490319 ~ 15490525 (+)
G427721 NA non-coding upstream 39607 15460387 ~ 15460626 (+)
G426931 NA non-coding upstream 158417 15339294 ~ 15341816 (+)
G426933 NA non-coding upstream 166548 15322016 ~ 15333685 (+)
G426951 NA non-coding upstream 244994 15253925 ~ 15255239 (+)
G427737 NA non-coding downstream 32301 15543017 ~ 15543311 (+)
G427739 NA non-coding downstream 40245 15550961 ~ 15551196 (+)
G427746 NA non-coding downstream 56387 15567103 ~ 15567331 (+)
G427748 NA non-coding downstream 57378 15568094 ~ 15568303 (+)
G427749 NA non-coding downstream 57969 15568685 ~ 15568915 (+)
G426828 NA other upstream 549641 14948890 ~ 14950592 (+)
G426312 NA other upstream 1169347 14330048 ~ 14330886 (+)
CI01000304_13578347_13595075 NA other upstream 1921386 13578049 ~ 13595097 (+)
G425718 NA other upstream 3061147 12436554 ~ 12436605 (+)
CI01000304_10555326_10571933 NA other upstream 4944529 10555216 ~ 10572164 (+)
G427860 NA other downstream 374738 15885454 ~ 15889591 (+)
G428017 NA other downstream 572514 16083230 ~ 16083714 (+)
CI01000304_16505174_16506124 NA other downstream 994146 16504764 ~ 16513625 (+)
CI01000304_16761621_16764983 EXOSC8 other downstream 1245230 16761372 ~ 16765057 (+)
CI01000304_17009769_17023302 ZDHHC20, ZDHHC20A other downstream 1500014 17009769 ~ 17023882 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_002233 wnt11 coding NC_007121.7 CM002894.2 32104305 ~ 32123204 (+)