Gene
RNA
| Item | Value |
|---|---|
| gene id | G426933 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000304 |
| NCBI id | null |
| chromosome length | 18613800 |
| location | 15322016 ~ 15333685 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU490192 | False | 685 | lncRNA | 0.41 | 2 | 15322016 | 15323585 |
| TU490193 | False | 1948 | lncRNA | 0.49 | 10 | 15322016 | 15333685 |
| TU490190 | True | 1208 | lncRNA | 0.44 | 4 | 15328426 | 15333685 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000304_15315146_15318470 | ESAMA | coding | upstream | 2029 | 15315146 ~ 15319987 (+) |
| CI01000304_15265823_15269133 | MSANTD2 | coding | upstream | 52425 | 15264968 ~ 15269591 (+) |
| CI01000304_15231039_15234179 | NA | coding | upstream | 87433 | 15231039 ~ 15234583 (+) |
| CI01000304_15148523_15151340 | NA | coding | upstream | 170621 | 15147834 ~ 15151395 (+) |
| CI01000304_15140709_15147357 | NA | coding | upstream | 174459 | 15140561 ~ 15147557 (+) |
| CI01000304_15348138_15379777 | FOXO1B, FOXO1 | coding | downstream | 14273 | 15347958 ~ 15380003 (+) |
| CI01000304_15423818_15456305 | LHFP | coding | downstream | 87926 | 15421611 ~ 15456881 (+) |
| CI01000304_15462162_15465511 | NA | coding | downstream | 128477 | 15462162 ~ 15465511 (+) |
| CI01000304_15467093_15471138 | PRKRIRA | coding | downstream | 133408 | 15467093 ~ 15471482 (+) |
| CI01000304_15472687_15483327 | NA | coding | downstream | 139002 | 15472687 ~ 15483327 (+) |
| G426951 | NA | non-coding | upstream | 66777 | 15253925 ~ 15255239 (+) |
| G426941 | NA | non-coding | upstream | 99315 | 15221621 ~ 15222701 (+) |
| G426930 | NA | non-coding | upstream | 119030 | 15202649 ~ 15202986 (+) |
| G426929 | NA | non-coding | upstream | 121887 | 15199864 ~ 15200129 (+) |
| G426928 | NA | non-coding | upstream | 127327 | 15194309 ~ 15194689 (+) |
| G426931 | NA | non-coding | downstream | 5609 | 15339294 ~ 15341816 (+) |
| G427721 | NA | non-coding | downstream | 126702 | 15460387 ~ 15460626 (+) |
| G427723 | NA | non-coding | downstream | 156634 | 15490319 ~ 15490525 (+) |
| G427737 | NA | non-coding | downstream | 209332 | 15543017 ~ 15543311 (+) |
| G427739 | NA | non-coding | downstream | 217276 | 15550961 ~ 15551196 (+) |
| G426828 | NA | other | upstream | 371424 | 14948890 ~ 14950592 (+) |
| G426312 | NA | other | upstream | 991130 | 14330048 ~ 14330886 (+) |
| CI01000304_13578347_13595075 | NA | other | upstream | 1743169 | 13578049 ~ 13595097 (+) |
| G425718 | NA | other | upstream | 2882930 | 12436554 ~ 12436605 (+) |
| CI01000304_10555326_10571933 | NA | other | upstream | 4766312 | 10555216 ~ 10572164 (+) |
| G427860 | NA | other | downstream | 551769 | 15885454 ~ 15889591 (+) |
| G428017 | NA | other | downstream | 749545 | 16083230 ~ 16083714 (+) |
| CI01000304_16505174_16506124 | NA | other | downstream | 1171177 | 16504764 ~ 16513625 (+) |
| CI01000304_16761621_16764983 | EXOSC8 | other | downstream | 1422261 | 16761372 ~ 16765057 (+) |
| CI01000304_17009769_17023302 | ZDHHC20, ZDHHC20A | other | downstream | 1677045 | 17009769 ~ 17023882 (+) |
