Gene
RNA
| Item | Value |
|---|---|
| gene id | G426931 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000304 |
| NCBI id | null |
| chromosome length | 18613800 |
| location | 15339294 ~ 15341816 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU490188 | True | 2284 | lncRNA | 0.35 | 2 | 15339294 | 15341816 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000304_15315146_15318470 | ESAMA | coding | upstream | 19307 | 15315146 ~ 15319987 (+) |
| CI01000304_15265823_15269133 | MSANTD2 | coding | upstream | 69703 | 15264968 ~ 15269591 (+) |
| CI01000304_15231039_15234179 | NA | coding | upstream | 104711 | 15231039 ~ 15234583 (+) |
| CI01000304_15148523_15151340 | NA | coding | upstream | 187899 | 15147834 ~ 15151395 (+) |
| CI01000304_15140709_15147357 | NA | coding | upstream | 191737 | 15140561 ~ 15147557 (+) |
| CI01000304_15348138_15379777 | FOXO1B, FOXO1 | coding | downstream | 6142 | 15347958 ~ 15380003 (+) |
| CI01000304_15423818_15456305 | LHFP | coding | downstream | 79795 | 15421611 ~ 15456881 (+) |
| CI01000304_15462162_15465511 | NA | coding | downstream | 120346 | 15462162 ~ 15465511 (+) |
| CI01000304_15467093_15471138 | PRKRIRA | coding | downstream | 125277 | 15467093 ~ 15471482 (+) |
| CI01000304_15472687_15483327 | NA | coding | downstream | 130871 | 15472687 ~ 15483327 (+) |
| G426933 | NA | non-coding | upstream | 5609 | 15322016 ~ 15333685 (+) |
| G426951 | NA | non-coding | upstream | 84055 | 15253925 ~ 15255239 (+) |
| G426941 | NA | non-coding | upstream | 116593 | 15221621 ~ 15222701 (+) |
| G426930 | NA | non-coding | upstream | 136308 | 15202649 ~ 15202986 (+) |
| G426929 | NA | non-coding | upstream | 139165 | 15199864 ~ 15200129 (+) |
| G427721 | NA | non-coding | downstream | 118571 | 15460387 ~ 15460626 (+) |
| G427723 | NA | non-coding | downstream | 148503 | 15490319 ~ 15490525 (+) |
| G427737 | NA | non-coding | downstream | 201201 | 15543017 ~ 15543311 (+) |
| G427739 | NA | non-coding | downstream | 209145 | 15550961 ~ 15551196 (+) |
| G427746 | NA | non-coding | downstream | 225287 | 15567103 ~ 15567331 (+) |
| G426828 | NA | other | upstream | 388702 | 14948890 ~ 14950592 (+) |
| G426312 | NA | other | upstream | 1008408 | 14330048 ~ 14330886 (+) |
| CI01000304_13578347_13595075 | NA | other | upstream | 1760447 | 13578049 ~ 13595097 (+) |
| G425718 | NA | other | upstream | 2900208 | 12436554 ~ 12436605 (+) |
| CI01000304_10555326_10571933 | NA | other | upstream | 4783590 | 10555216 ~ 10572164 (+) |
| G427860 | NA | other | downstream | 543638 | 15885454 ~ 15889591 (+) |
| G428017 | NA | other | downstream | 741414 | 16083230 ~ 16083714 (+) |
| CI01000304_16505174_16506124 | NA | other | downstream | 1163046 | 16504764 ~ 16513625 (+) |
| CI01000304_16761621_16764983 | EXOSC8 | other | downstream | 1414130 | 16761372 ~ 16765057 (+) |
| CI01000304_17009769_17023302 | ZDHHC20, ZDHHC20A | other | downstream | 1668914 | 17009769 ~ 17023882 (+) |
