CI01000304_15483378_15486113


Basic Information

Item Value
gene id CI01000304_15483378_15486113
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 15483378 ~ 15486386 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_15483378_15486113.mRNA
ATGGTAGTTGGTCAAGTTGAAAATGGTCATTCTGTAACCAGGTTTCCAAGTGAAGGTGAAACTAGTCAGTTAGTATCAGGAGATCAAAGTGGATCAGAGCAGCTCATGGTAGTTGACTCCGGAAATGATCAATCCTTAACAGCAGATCAAAGTGTATCTGGTCAGTCAGAAATAGTAGATCCAAGTGTAACTGAACAGTTCATAGTAGTTGGTCAAGTTGAAAATCACCATTTCATAGTAGAGGGTCAAGATGACACTGCTCAGACAGAAACCGGGTTTCCAAGTGGAGGTGAAACTAGTCAGTTAGTATCAAGAGATCAAGGTGGATCTGATCAGTTCATGGTAGATGATGACTCTGGAAATGATCAGTCTGTAACCGAAGATCGAGATGTAACCTGTCAGTCAGTAACAGAAGATCAAAGTGTACCTGATCAGTTCATAGCAGTTGGTCAAGTTGAGTCAGAACAGTCTATAGTTGATGGTAAAAACGAAGCTGGTCAGACAGAAACTGTATTTCCAAATGAAGTTGGAACTAGTCATTTAATATTGGGTAATCAATGTAGGTCTGATCAGGTCATGGAAGTTGACTCTGGAACGAATCAGTCTGTAATAGCAGATCAAGGTGGAACTAGTCAGTCTGTATTACCAAATGAAATTAGAACTAGTCAGCTAGTTTTGAGGGATCAATGTGGATCTGATCAGCTCATGGCAGTTGAGTCTCGAAATGATCAGTTTGTAACAGCAGATCAAAGTGGAACTGGACAGTCATCAGCAGATCAAACTGTAACTGATGCATTTGTGGAAGCTGCAACTCATCAGCCTATAGTAGAAGATCAAAGTGGATCTGGGTTAGCAGATAATGATGGAACTTGGCAGGTAGCATCGGAGAATCAAAGTGGAACTGATCAGCTTGTGGCAAGTGTACCCTGTGGAAATAATCAGTCTGTAGTAGAAGCTCAAGGTGGAACTGTTCTTGCAATTGCATTGAATCAAAGTGTACCAGATCAGTCTATGGAACTTAGTCAAGTTGAAACTGACCAGATAGTACCAGGGAATCAAAGTGAAATTGATCAGTCCAACACAGTAGATCAGTTTGGCCCTGACCAGCCTAAAGTAGCTGCAGAAGGTGGCACAAATCAGTTCAATTTGGTGGCTCTAGATGGCTCAGACCAAGAAACTGCAGCAGTACACGTTTGCCTTGATCAGCCCTCTGCAATAACTCAGAGCGTTACTGACCATTACACACCTGTTTCACCTGAGGATATTACTGATCATCCCATAGCATCAGAATCAGAAGGCACAGACCAGTCTGAAGTAAAGGCTCATGATGGCACAGACCAAGTAATTACTCTGGATAGCACTGGACCTAAAAAAATTGTTTTTACCCACTACAGTGCTGATGCTCGAGAGGAATTGCTCAAAGAACTATGTAACATAAAATTCTTTTCCATAGTCGCTGAGGAAGAGTTTGCAATTGATGGCCAACCTTACATCCCTGTAGGAATACACTACCTTGACAAACAAGACATTCAGAGTGAAAATATATTAGCATTTATCCCCCTTTCCACAAACATTGCTTCATTTGTGGATACTCTCACCATTGCCCTCTCTGAGAAGTGGGGTTTGAACTTGGCACTCTGTAGAAGTCAATCCTTGGCAAGACCAGGTGCCTCACTCTCTCAGATGACACAGGCTTCAGATTTGCTTTCCCAGAGACTCCCTCATGCTTTCAGTTTCCCAATCCCTGTTACTCTGAAGTCTTTGCTAGCCAGTTGGTCCTCCCTGAGAGAGATAACTCACAGTTTTGAGTGCTTAGAGCAGCTGTTTATATGGTTCTCTGAGGATGTTCGACGGGTAAGACTAGAGGATGCTGTTGTACATTTGTTCCAGAAGGACGAAAGGAAAGCCAGTGAGCTGAAAGCCAAGATCAGCAGTAATCAATTGGCAATGAGCCATGAGGTTCTGGAAATTACTACAGACATTCTAGAGGCCATCGTGCTTTGCTTGAATGAGATGAAAGGAAACCAAGATAATGAGGCAAACGCAGCACAGGCCCAGAGCTTCCTTTCTGCTGTCCAAAACTTTGATTTCATATTGACAGTTGTGATTATGAAAAACATCTTAAGCCTCACCAAAAACCTAAGTCTGAGTCTTCAGGGAAATTCCTATGATGTGTATCAAGCTGTAAACCGCCTGTCTGATCTCCTGCCCTCTCTCAGTGAAATGAAGAACAGTATTGACACGTACCATCAAACCTGGTTTCAAGAGGCAGTTGCACTAGCTTCTAAGCTGCAGGTACCTTTGCTACAACCACCCTTAAATGTGCACTACAGAGAGGACCTCAGTAAAGGGGCTATTGAGCACTGTATTGCTGAGGTGGAGGGGTTCTCCCAGGATGTTCTGTCTGCTCTTCGCTGCTTGCAGGTTGTGCCTTATGTCATGTCAAACGTGGAGGGATGCTGCAAGGACACTGAGTTTGCCAAGGTGTTTCAAGATGACTTACCTGACCCAGACTCCTTCCAGACTGAGCTGCAGAGGTGGAGGGACAGGTGGCAAGATACTTCTGCCACACATCAACACCTACCCAACACTGTTCTTGGAACTCTCAAAGCTTCTGACATCCAGTCATTTCCCAACATTTCAACCATCCTTAGGCTCCTGGCAGTCCTGCCCTGCTCCAGCATGCACAGTAGCTTCAGACAGGGAAAGATGAAATCTGAGCTGTACCCTCTGTAGTAGGCTTGACTTAACTGCCCCCAAACAAGCTCTCCATTAGGATGTCATACACTGCTGAAACTTCAGAATGTCCCTCTGTATTCTCTAAACTGTAGATCACATCTGATTGTAGGTTTCAGTATGTTTATTTTATTACTTAATAATTATGAATTAGACCTGTACACTTTAAGTATAATCACATAATTGTTTTATTGATGTTTTGTCTTTTTTATTTTCCTTTTACGTAAGTGGCATGGAAAAAGAGGACTGCCAATTGGGACCAATGTCTTGCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_15483378_15486113.mRNA True 3009 mRNA 0.43 1 15483378 15486386

Neighbor

gene id symbol gene type direction distance location
CI01000304_15472687_15483327 NA coding upstream 51 15472687 ~ 15483327 (+)
CI01000304_15467093_15471138 PRKRIRA coding upstream 11896 15467093 ~ 15471482 (+)
CI01000304_15462162_15465511 NA coding upstream 17867 15462162 ~ 15465511 (+)
CI01000304_15423818_15456305 LHFP coding upstream 26497 15421611 ~ 15456881 (+)
CI01000304_15348138_15379777 FOXO1B, FOXO1 coding upstream 103375 15347958 ~ 15380003 (+)
CI01000304_15500233_15509862 WNT11, WNT11.L, WNT11R coding downstream 13847 15500233 ~ 15510716 (+)
CI01000304_15723867_15741978 NA coding downstream 237481 15723867 ~ 15742863 (+)
CI01000304_15776859_15777750 ZBTB21 coding downstream 290473 15776859 ~ 15777768 (+)
CI01000304_15779082_15779951 ZBTB21 coding downstream 292696 15779082 ~ 15780105 (+)
CI01000304_15785399_15786785 RAD51C coding downstream 299013 15785399 ~ 15787028 (+)
G427721 NA non-coding upstream 22752 15460387 ~ 15460626 (+)
G426931 NA non-coding upstream 141562 15339294 ~ 15341816 (+)
G426933 NA non-coding upstream 149693 15322016 ~ 15333685 (+)
G426951 NA non-coding upstream 228139 15253925 ~ 15255239 (+)
G426941 NA non-coding upstream 260677 15221621 ~ 15222701 (+)
G427723 NA non-coding downstream 3933 15490319 ~ 15490525 (+)
G427737 NA non-coding downstream 56631 15543017 ~ 15543311 (+)
G427739 NA non-coding downstream 64575 15550961 ~ 15551196 (+)
G427746 NA non-coding downstream 80717 15567103 ~ 15567331 (+)
G427748 NA non-coding downstream 81708 15568094 ~ 15568303 (+)
G426828 NA other upstream 532786 14948890 ~ 14950592 (+)
G426312 NA other upstream 1152492 14330048 ~ 14330886 (+)
CI01000304_13578347_13595075 NA other upstream 1904531 13578049 ~ 13595097 (+)
G425718 NA other upstream 3044292 12436554 ~ 12436605 (+)
CI01000304_10555326_10571933 NA other upstream 4927674 10555216 ~ 10572164 (+)
G427860 NA other downstream 399068 15885454 ~ 15889591 (+)
G428017 NA other downstream 596844 16083230 ~ 16083714 (+)
CI01000304_16505174_16506124 NA other downstream 1018476 16504764 ~ 16513625 (+)
CI01000304_16761621_16764983 EXOSC8 other downstream 1269560 16761372 ~ 16765057 (+)
CI01000304_17009769_17023302 ZDHHC20, ZDHHC20A other downstream 1524344 17009769 ~ 17023882 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_002862 NA non-coding NC_007121.7 CM002894.2 32077811 ~ 32084624 (-)