G427777


Basic Information

Item Value
gene id G427777
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 15705318 ~ 15707397 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU491205
GCTTGTTTCTGCCACTACATTAAAAAAGAATGGTAATTGTGACTTTTTATCTCACAATTCTGACTTTTTTTCTCAGAATTGCGAGATTTAAACTCGCAATTGCGTTATAAAGTCAGAATTGCGGGATATAAAATCGCAGTTCTGACTTTTTTTCTCGTAATTACAAGTTTTTATCATGCAATTTTGACTTTATAACAACCAATTCTGACCTTTTTTCAGAATTGCGAGATATAAACTAACAATTGCGAGTTATAAAGTCAGAATTGCATAATATAAACTCGCAATTGCATCTTATAAAGTCACAATTGCGTGATATAAACTCACAATTCTGCCTTTCTCAGAATTGTGAGTTTATGGGCCCTATCATACACCCAGCGCAATGCCGCACCAGGCGTGACGCATATGTTTTTTACTAGTTTCAGCCTGACACAGTTATCACTTTCACGTCCTGCACCACGTTGTTTAAATAGCAAATGCATTTGCGCCCATTTGTGCGCTCATGGGCGTGCTGGTCTGAAAACGAGGTGTGTTCAGGCGCATTGTTGGCGTGTTGCTATTTTGAGGCAAATGAAATAGACTGCGCCACTGACCAACTGAAACCTGGTCTAAAGTCAATGGGGCACTATTTTTTTTATTTTTTTTTGTTATTTAAAGATCGCATTAGTAATATGCACCTATTTGCGGGTGCACAACGTGCATACACTCTGCTTATTACACACAGGGACGCGCAGCAGCACACAAACATGCCAAATATTAAAAATAAAAAGATTACAATGTAAAAGATTATTGTTGTGTGCAAAAAGATAAAAATGCTTTGGTGGAATCCGGCTTTTCCCGTAGATGGTCTGCTCGCACGCTTTAACCTCGTGCATGAGCAGATCCGTTTCCTCGCTAGATAAGCGTTCTGTTTTTCCGTTTGCAAATTCCGCTATGTAAATAGCGAATCCACCATGGCGCGAGCGCAACTGGCTTTTAAAGGGAGTGGGAGATGAGACTCCAATTGGTTTATTGAACGTTACGCCCCAAACAGACCGGGCGTGCCAACCATTTTCCTGTCGTTAAACTAGCAAAAGTAGATTTGGACACGCCCTAAGTGCACTTGTGCCGTGCACTTTAGACCATGCGCTTATATCGTTAAAATAGGGCCCTTAATCTCACAATTCTGACTTTAGAACTCGCAATTGCATGTTATAAAGTCAAAATTGTGAGATATAAACTCGCAATTCTGAGAAAAAACGTCAGTCATTTTTCCCTCACAATTGGACATTATAACACACAATTGCAAGTTTATATCAATTCTGACTTTATATTATTATATTATATTATATTATATTATATTATATTATATTGGAATTTTGGGGAAAATTTTTTTGACAGTTTTTGAAGAAACGATTGATGTTTGTTTCTTATAAGAGAGTGGAAGAATAGTCTATCAATCAGTGGGTACATAGGGCAGGTTTCAACAGAAGTTCTTCAATAATATTATTGACATCAGCACATGTAGGGCTGTGTCCCTCTACGCAATAGGACAAAGCTCAGAGGTCCTTGATAGACTACTGGATTCTTATCTACACCACAGAGAGGACAACTATGGTCCTCTTTTTAATCAGACAAAAAAATGAACTTTATGCATTGAGAAAGTTTGCTCTTCATTCAGTGATACATGATGCAACTGCAAGTAATGAATGCATGGTTTAATCCATTAAAATGAAACTAATATGCAGCTATAAGTACCTCCAGACATCAGGTAATCCCTAAACACTGGCAAGCGGAAGTTTCCAGCCAATGTGGCAAGAGATGGCTTAATTCCGGGGAACATCTTGGAGAATCCTGTGGCCTCTGTCCCAAAGTTACAAAAACCACCAAAACAGAAGATGCCATGAGGATGGTAGCCAAAAATGTAGTTTCGGCTAGGAAGCAGGTTATTCGTCTTGATGAGCTGCAAATAATCAGAGAAAAATGCAGCAGGAGGTTAGTTAATTTGCATTGTTTACTATGTGATTATACAGATAGGGTGTAATGCTAAAAATCCCAGTAAAATTATTAGCCTAACTAATTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU491205 True 2060 lncRNA 0.38 2 15705318 15707397

Neighbor

gene id symbol gene type direction distance location
CI01000304_15500233_15509862 WNT11, WNT11.L, WNT11R coding upstream 194602 15500233 ~ 15510716 (+)
CI01000304_15483378_15486113 NA coding upstream 218932 15483378 ~ 15486386 (+)
CI01000304_15472687_15483327 NA coding upstream 221991 15472687 ~ 15483327 (+)
CI01000304_15467093_15471138 PRKRIRA coding upstream 233836 15467093 ~ 15471482 (+)
CI01000304_15462162_15465511 NA coding upstream 239807 15462162 ~ 15465511 (+)
CI01000304_15723867_15741978 NA coding downstream 16470 15723867 ~ 15742863 (+)
CI01000304_15776859_15777750 ZBTB21 coding downstream 69462 15776859 ~ 15777768 (+)
CI01000304_15779082_15779951 ZBTB21 coding downstream 71685 15779082 ~ 15780105 (+)
CI01000304_15785399_15786785 RAD51C coding downstream 78002 15785399 ~ 15787028 (+)
CI01000304_15817532_15846675 PPM1E coding downstream 108379 15814649 ~ 15846892 (+)
G427776 NA non-coding upstream 1783 15622304 ~ 15703535 (+)
G427808 NA non-coding upstream 37448 15655415 ~ 15667870 (+)
G427811 NA non-coding upstream 46260 15658518 ~ 15659058 (+)
G427752 NA non-coding upstream 130100 15574948 ~ 15575218 (+)
G427750 NA non-coding upstream 131330 15573669 ~ 15573988 (+)
G427843 NA non-coding downstream 6512 15713909 ~ 15714336 (+)
G427844 NA non-coding downstream 7445 15714842 ~ 15715121 (+)
G427906 NA non-coding downstream 32861 15740258 ~ 15741104 (+)
G427915 NA non-coding downstream 101806 15809203 ~ 15812033 (+)
G427917 NA non-coding downstream 105706 15813103 ~ 15814423 (+)
G426828 NA other upstream 754726 14948890 ~ 14950592 (+)
G426312 NA other upstream 1374432 14330048 ~ 14330886 (+)
CI01000304_13578347_13595075 NA other upstream 2126471 13578049 ~ 13595097 (+)
G425718 NA other upstream 3266232 12436554 ~ 12436605 (+)
CI01000304_10555326_10571933 NA other upstream 5149614 10555216 ~ 10572164 (+)
G427860 NA other downstream 178057 15885454 ~ 15889591 (+)
G428017 NA other downstream 375833 16083230 ~ 16083714 (+)
CI01000304_16505174_16506124 NA other downstream 797465 16504764 ~ 16513625 (+)
CI01000304_16761621_16764983 EXOSC8 other downstream 1048549 16761372 ~ 16765057 (+)
CI01000304_17009769_17023302 ZDHHC20, ZDHHC20A other downstream 1303333 17009769 ~ 17023882 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G102000 NA non-coding NC_048565.1 CM023219.2 93751500 ~ 93752263 (+)
tiger barb (Puntius tetrazona) G76932 NA unknown NC_056708.1 CM032077.1 12771426 ~ 12775541 (+)