G427917


Basic Information

Item Value
gene id G427917
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 15813103 ~ 15814423 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU491354
GCATAAGAGATAAAAAGTCCTCCATACTGTTTCTCCGGCCTTTTCAGCTCAGTTCTTGATGTCGTCGTGACCTCCTCAACCAGGAGAAACACTGAAGTGGAAAACCACGTTAGTGCTATTTTGAATCGCACACCTGCGTTATTCTTTACTCTGCGTGTTGTACATAGTGAGTAAGACGTTTTAGACACTGAGATAGAGATGAGGCACCGTAACTTTTCATACGTCGTTTCACAACACTGACAGCGAAAAAGCACACAGTGACAGCATGGCCCTCTCCGAGTCGCAGGGAGCTATTAGCTGACTGAAGATAGTGTGCTGCGTCGGTCCGCCTCTGCAGTGGCCTTCAGTTGTCAGTGCTGGGAGAGTGTACTGCGTGAGGGCTGAGTCATAATAAGCAATGTGCTGATGAGCAGAGCCGCCCCAAAGATCCACGACTAGCCACTGTGTTCCAGTCAAATGCCTCGATGTACCCCGCTCTCTCTCTCTCCGCTAAAGCTCTGACTCATCAGTGAATAATCTGGACCACCGCAGGGCTTAGATTCTGACTCATCCCTCTAAACCAGGGATTTTGGGGGCTTCTTAGAGTGGGATAACTATAGAGGAAAGCCTAGGCTTTGGAAGAGGAAATGGAAAGCAGTCTCTTGTCCATGTCGCCTGCAATCTTGACCTTGTTTGGATCTGTGTTTACCACTGGATAGAAGTTACAAGTGTTCATTAGCCTTATGAGGAAGAGGCTTTGTTGATAGATGCTTTGTCATTTTGTCTATAGATAAATTATGACTGTGCAGGTTTTCCCCCAAGATGATCTCGCTGCTCAAAACAACAGATCTGCCAGCTGGTGGATTGCATAATCCAGTCTTTGGTCTTAAGGCCACTTACGTCGTTCTCTGATGACTGGCAAATTTGACTTGCATCACAAAAACGAAAGCAAAATGTCTTCTAAAAAATGTTGAGGTTTCTTTTGTTGCTTTATATTGGATTTGATATTTATATAAATGTTTATATTACATTAAATTCCTTCTATATTTACTCACCCTCATGCTTGCTTTTTTCCGTGAATCACAAAAGGTGAATTTTTGAAGAAATATTTTTTGAAAAATGAATGAGGACTTGGGATAAGCTTAAAAACAACAAAAAAGTACTATAAAAGTTTTGAACAAATTGTTTTTTTGTCTTTTGTTGTTGATTCAGTTCAGCGAATAATGACTTAAATTTTTGATCTTATTCACACAAGCTATCATTGAAGCTTCGGAATACACACAGAATTCACAATGTTTTAATGTTTTTAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU491354 True 1290 lncRNA 0.41 2 15813103 15814423

Neighbor

gene id symbol gene type direction distance location
CI01000304_15785399_15786785 RAD51C coding upstream 26075 15785399 ~ 15787028 (+)
CI01000304_15779082_15779951 ZBTB21 coding upstream 32998 15779082 ~ 15780105 (+)
CI01000304_15776859_15777750 ZBTB21 coding upstream 35335 15776859 ~ 15777768 (+)
CI01000304_15723867_15741978 NA coding upstream 70240 15723867 ~ 15742863 (+)
CI01000304_15500233_15509862 WNT11, WNT11.L, WNT11R coding upstream 302387 15500233 ~ 15510716 (+)
CI01000304_15817532_15846675 PPM1E coding downstream 1353 15814649 ~ 15846892 (+)
CI01000304_15896045_15897082 NA coding downstream 81622 15896045 ~ 15897843 (+)
CI01000304_15964692_15966904 NA coding downstream 149493 15963916 ~ 15967493 (+)
CI01000304_16040037_16043960 NA coding downstream 225614 16040037 ~ 16043960 (+)
CI01000304_16109760_16122597 NA coding downstream 292955 16107378 ~ 16122874 (+)
G427915 NA non-coding upstream 1070 15809203 ~ 15812033 (+)
G427906 NA non-coding upstream 71999 15740258 ~ 15741104 (+)
G427844 NA non-coding upstream 97982 15714842 ~ 15715121 (+)
G427843 NA non-coding upstream 98767 15713909 ~ 15714336 (+)
G427777 NA non-coding upstream 105706 15705318 ~ 15707397 (+)
G427904 NA non-coding downstream 26488 15840911 ~ 15851136 (+)
G427889 NA non-coding downstream 51743 15866166 ~ 15931957 (+)
G427872 NA non-coding downstream 68647 15883070 ~ 15945412 (+)
G427902 NA non-coding downstream 107756 15922179 ~ 15938102 (+)
G426828 NA other upstream 862511 14948890 ~ 14950592 (+)
G426312 NA other upstream 1482217 14330048 ~ 14330886 (+)
CI01000304_13578347_13595075 NA other upstream 2234256 13578049 ~ 13595097 (+)
G425718 NA other upstream 3374017 12436554 ~ 12436605 (+)
CI01000304_10555326_10571933 NA other upstream 5257399 10555216 ~ 10572164 (+)
G427860 NA other downstream 71031 15885454 ~ 15889591 (+)
G428017 NA other downstream 268807 16083230 ~ 16083714 (+)
CI01000304_16505174_16506124 NA other downstream 690439 16504764 ~ 16513625 (+)
CI01000304_16761621_16764983 EXOSC8 other downstream 941523 16761372 ~ 16765057 (+)
CI01000304_17009769_17023302 ZDHHC20, ZDHHC20A other downstream 1196307 17009769 ~ 17023882 (+)

Expression


Co-expression Network