G427902


Basic Information

Item Value
gene id G427902
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 15922179 ~ 15938102 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU491332
GTCAGAATTGTGAGTTATAAAGTCAGAATTGCGTGATATAAAGTCAGAATTGCGTGATATAAAGTCAGAATTGCGAGTTATAAAGTCAGAATTGCGAGACATAAAGTCAGAATTGCGTGATATAAAGTCAGAATTGCGAGTTATGAGGGGAAAAAAGACTGAAGTTTTTTCTCAGAATTGCAAGTTTATATATCACAATTATGACTTTATAACTTACAATTACTGAGAAAAGTCAGAATTGCGAGATATAAACTCAATTCTGAGGAAAAAAGTCAGAATTACGAGATATAAACTATAACTTTATAAGACGTAATTGCAAGTTTATATCATGCAGTTCTGACTTTATAACTCGCAACTGAGTTTATATCGCAATTCTGAGAAAAAGTGTCAGAATTGTGAGATAAAACTCGCAATTGCAAGAAAAAAAAGTCAGAATTGCAACTTTATATCACGCAATAACTAATGTTTAACTAATGTACCTTATTATAAAGTGTTACCAAATCTTTTGTAGAATTATAAATGACTTTACTATCACTTCTGATCAATTTAATGCATCCTTGCTTTCAAAAAAAACAAAAAAACAAAACACTTACCTACCCTAACCTTTTGAACAGTAGTGTACTATATTAGTATGACGAAGCCACAATCAATTTTACAACAGAAAGCTTACTGGCTTATTTAGAAAAAGTGAATGCAACAATGATTGTATTCAGGTGACAACAGTGAGTCCTATACTACATGAAGTGACTTAACTGATTGCGGGTAAGTGGAAAACACGTGCGAATGCCTTGATCCTTGTTTTCCTGATGGCAGAAAAAGACTCACCTGCTTTCTGCACTTGTAACTCTCTCTTGGCCTGCTCCAAGATGGACTTGATGGCTTCATCAGAGCCGGTCTCAGGTGTGCGGATCCGCGTGGTGATGTTACCTGTGAAGACACGAGAAGGACATGTACCTGTGTGTGAGACATCGTGTGTAACAACATATAGATCTGTTTTGTTTTGAAATGGAGCACAATATACAATCTTTTAAATTGAAAACAGCAACAAATATTGCTATGCTCTGTACTATTTCTGCACGGCAAGAATAAACGGGTGCAAACGCAAGCTTACTTTAACAACAATCTATGCGGTATGCTAAAATAAGGCTGGCACTTTTTTATTTTATGGAAATGCAATCCTGCAACCAAACTCAATGACACAGAACTAAAAAACCATTAGCAATCGTTTGCTTGTCTATAATACTGTGTGTATCAGCACCTGCGCTGCCCCTGGCTACAGCAGCACTTCCTGTGCAAGGACTGAAACCTTTTCCTGTCCTCCACAAGTCCACAGAACAAAGAGTCGGTGAGATTTGGACAAAGTCCATGAGAAACAACAGAGCTTGTATGGAAGTATCATCAGACGGGTCGGCACAATAATAATAAATATATATAGAGAGAGAGAGGGAAAAAGTGGCAGAGGGAACTGCCCAATGAGCAGTGGGCAGCGGGGCAAGGTCAGAGTCACTGGTGTGTGATGAGAGCAGCTGGACGTGTGTGTGAGGTGGAAGTAATGCTCTCTCGCCCTCTCTCTCTCTCACGCACACACACACACACACACACACAGACTAGCCACCCACAGCGCCGCCCTAGGGGAGACTCAACCACCAGTTGTAATGTGGTGGCACTGTGGATCTGCCTGAAGGATTCTGCCACACACACATATATAAACACACAAGCTGACCACGAAATAACAGGACAGACTTTTCAAGGACCTCCATGATGGAAAGTTACATTGGTTTAGACTTGATAACACACACACAAAGTTTTTTCCACAGTTTGAAACTAATCTATGAAGTCAAAGGTGTAGCATTTATTGTAAACAGCTGTCTTTAGACAGTCGGAATGAGATCTTTTTCAACACTTCTTCCAGCCCTGTCTGTCTCACTCACTTGTTTTGCAACAGATTCCAGGCCAGAGATTGAGAAGAAACAGACCAGCACAACAAAAACATACAGACACAGCGGATCTGACACTCCAGAAACCCGTAACACGAGAGGGAAGGCGTGAGACAGACCTGGCCGCGTGGAGCCTTCCGAGCCGGTTCTTCGCTTCGGAACATCCTGAAACACTCTGTTCAGGTTCTGGCCTGGGTTCTCTGTTGGAAAACAAGTGGCGGAAGATAGAAATAAATACAGGCATGCAGAGAATCACTCTTACCATTTCTGGTGCTTTCTGGATCTGATTGGATGGTTGCAGGGTCTTGCCAGCTGAAGTGAGCTGCTCCCTCAGACTCACGGCCTCCCTCTCTGCCGCCTCGGCCCTCTGTGGGCCACAAACAGAACAAATGGGTGAAAAATTGCCATGGTTGAGGATTCATAACCATTATATCAACCGACGTTTATGAATTGTGAAGACTGGGAGCTAAAAGATCACAGGCCTGTTTTTATGTGGCTGGGCTGAAAAATGTTAACTGAACTCACATGGGTGCTACTTGGCTGAGTGCTCTAGTATTCAAGCTAAAGTATGTCAAGGTATGTACGGTTGGTTGAGTCACAGAATATGCAAATCACACAGAATTCATTTTAAATAAAGATTGTGGTGTTAATTCATTTGCTGCCCTAGAATGGATGCCTGACCTAAAGACAAACGGCTGGATTCATGATGAGACTTCAAAAGTTAAATATATTGTAAAAGCTGCTTAAAGCATTCAACCTTTAGCTGCACCGAATTCAACACCACCATCTTTATGCATTTATGGTAATGACAAGCTTAATTATGCTAATTTATTCTAAACGTCTACGTAACAAGTCTTACCAAATGTTCTTTTTTCTGTTGATTGGAATAATAATGCTAATGAAAACAATGATTATAAACTTTTTACTCGGGTGTTTGTTTATTGCTTGCCCTACATTTTCAAAAACATAAAAGTTTCAGAGACGAGCAAACAGATTTTACAGTTTACAAAAATATACATTCAGAAAAATGGAAGTTTTGAGTATTTTAGCAAGAAATAAGTCAAGAAGAAATAAATTAATAACATTATATAATAATATATAATAAAACGTTCCTAAAGATCTGCTTTCCCAAACTTATAAGGTCAGAAAAACAATAGACTGACAATAAAACAGAATCCCCCGAAATGCACAAAACCCATAAAAAGGCAAGAGATTCTTTATATTGCATCACATAAAAGATCTGATATCCATTTAGATTTAGCCGTTGGGGCTCACAGCTCAAAAAAAGTGCAAGGGAATGATGGATTTCTTCCAAAAGGAAAGCAGATGGAGGGAATTAGGATATGTAGAACTTGGATGTATGTGACTCCAATAAAGTTGTGTGTGCTAATAAAAGAAATTTGCAAACTAGCACTACAACTTCTGTACAGTCCATTAGACCAGAGGTATTAATAAAAGACCTAAACAAGCTGTTATTGTGTCTTAGATTTGCATACAATAGAAATACGAGTCACTTTTCCATGAGGAATATGGCCTTTACCTGATTGGCTCTTTCCAAATCTGTCATCACCGCTTCAATCTCATTGGCCCTGAAAAATGAAGGCGCAGATTACTTATGCAGGCAGGAGGGAAATGGTAGCGCAGGTTCGTTGCAGTAAAACACAATGATGCAACATATCGCAATGCAATAAAATGGGTCATGTAAAGAACAGACCAGGTGGAACAGAAGACCTCACATCAACATAAAACGGGTAATCAGCATCTTGCCTCACTTCTGGGCCGCTTGTATGTGTGCGTATGCAATTATGAACAGC

Function

NR:

description
UBX domain-containing protein 6-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU491332 True 3751 lncRNA 0.39 2 15922179 15938102

Neighbor

gene id symbol gene type direction distance location
CI01000304_15896045_15897082 NA coding upstream 24336 15896045 ~ 15897843 (+)
CI01000304_15817532_15846675 PPM1E coding upstream 75287 15814649 ~ 15846892 (+)
CI01000304_15785399_15786785 RAD51C coding upstream 135151 15785399 ~ 15787028 (+)
CI01000304_15779082_15779951 ZBTB21 coding upstream 142074 15779082 ~ 15780105 (+)
CI01000304_15776859_15777750 ZBTB21 coding upstream 144411 15776859 ~ 15777768 (+)
CI01000304_15964692_15966904 NA coding downstream 25814 15963916 ~ 15967493 (+)
CI01000304_16040037_16043960 NA coding downstream 101935 16040037 ~ 16043960 (+)
CI01000304_16109760_16122597 NA coding downstream 169276 16107378 ~ 16122874 (+)
CI01000304_16132778_16137222 MDH2.S, MDH2, MDH2.L coding downstream 193773 16131875 ~ 16137348 (+)
CI01000304_16138794_16144084 NA coding downstream 200692 16138794 ~ 16144237 (+)
G427904 NA non-coding upstream 71043 15840911 ~ 15851136 (+)
G427917 NA non-coding upstream 107756 15813103 ~ 15814423 (+)
G427915 NA non-coding upstream 110146 15809203 ~ 15812033 (+)
G427906 NA non-coding upstream 181075 15740258 ~ 15741104 (+)
G427961 NA non-coding downstream 48473 15986575 ~ 15987610 (+)
G427894 NA non-coding downstream 56394 15994496 ~ 15996274 (+)
G427855 NA non-coding downstream 129646 16067748 ~ 16068983 (+)
G428020 NA non-coding downstream 149967 16088069 ~ 16089172 (+)
G427864 NA non-coding downstream 153298 16091400 ~ 16097493 (+)
G427860 NA other upstream 32588 15885454 ~ 15889591 (+)
G426828 NA other upstream 971587 14948890 ~ 14950592 (+)
G426312 NA other upstream 1591293 14330048 ~ 14330886 (+)
CI01000304_13578347_13595075 NA other upstream 2343332 13578049 ~ 13595097 (+)
G425718 NA other upstream 3483093 12436554 ~ 12436605 (+)
G428017 NA other downstream 145128 16083230 ~ 16083714 (+)
CI01000304_16505174_16506124 NA other downstream 566760 16504764 ~ 16513625 (+)
CI01000304_16761621_16764983 EXOSC8 other downstream 817844 16761372 ~ 16765057 (+)
CI01000304_17009769_17023302 ZDHHC20, ZDHHC20A other downstream 1072628 17009769 ~ 17023882 (+)
CI01000304_17315088_17315342 NA other downstream 1376736 17315087 ~ 17315600 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00005410 NA coding CM030142.1 CM030142.1 1214157 ~ 1244875 (+)