G428020


Basic Information

Item Value
gene id G428020
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 16088069 ~ 16089172 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU491461
TGGTGTTTGTGGTCTGTGGCAGGCCGAACCAACATCATCCAGTTACAGTCGTCTTCATTGGATGTGTCAAAACACACTACTGAGCCATCCTTCTGGAATATCTTTAAAGGAAATGCACCCTCAATTTGAAGGCTTGGAACCCTCTTGGCCTCAAAAGGACCAAATCGAGTCCTCTTAACCAGTCGTCGAAGCACAAACACGCCTTCATTCCCCTCCTCAGCTGACCTGATCTCCAAGCTGTCTGGTAAAGACGACCGTGCCCGACTTAGAACAAATGAGTCCTTCACCGTGACGATGGGCCCCAGCTCAGGACACTCAGAGTCATGGTACTGCCTGCAGTCCTCACACCAAATAAACTCATCTGGTGTCTGCTCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU491461 True 375 lncRNA 0.50 4 16088069 16089172

Neighbor

gene id symbol gene type direction distance location
CI01000304_16040037_16043960 NA coding upstream 44109 16040037 ~ 16043960 (+)
CI01000304_15964692_15966904 NA coding upstream 120576 15963916 ~ 15967493 (+)
CI01000304_15896045_15897082 NA coding upstream 190226 15896045 ~ 15897843 (+)
CI01000304_15817532_15846675 PPM1E coding upstream 241177 15814649 ~ 15846892 (+)
CI01000304_15785399_15786785 RAD51C coding upstream 301041 15785399 ~ 15787028 (+)
CI01000304_16109760_16122597 NA coding downstream 18206 16107378 ~ 16122874 (+)
CI01000304_16132778_16137222 MDH2.S, MDH2, MDH2.L coding downstream 42703 16131875 ~ 16137348 (+)
CI01000304_16138794_16144084 NA coding downstream 49622 16138794 ~ 16144237 (+)
CI01000304_16146512_16201457 RYR1, RYR1A coding downstream 57029 16146201 ~ 16202105 (+)
CI01000304_16228517_16231072 CUNH21ORF59, CSSA11H21ORF59, CLG07H21ORF59, C19H21ORF59, C10H21ORF59, CSGR11H21ORF59, CLG14H21ORF59, C16H21ORF59 coding downstream 139345 16228517 ~ 16231553 (+)
G427855 NA non-coding upstream 19086 16067748 ~ 16068983 (+)
G427894 NA non-coding upstream 91795 15994496 ~ 15996274 (+)
G427961 NA non-coding upstream 100459 15986575 ~ 15987610 (+)
G427872 NA non-coding upstream 142657 15883070 ~ 15945412 (+)
G427902 NA non-coding upstream 149967 15922179 ~ 15938102 (+)
G427864 NA non-coding downstream 2228 16091400 ~ 16097493 (+)
G428027 NA non-coding downstream 40535 16129707 ~ 16130080 (+)
G427868 NA non-coding downstream 129275 16218447 ~ 16219937 (+)
G427866 NA non-coding downstream 130858 16220030 ~ 16220408 (+)
G428069 NA non-coding downstream 333575 16422747 ~ 16422949 (+)
G428017 NA other upstream 4355 16083230 ~ 16083714 (+)
G427860 NA other upstream 198478 15885454 ~ 15889591 (+)
G426828 NA other upstream 1137477 14948890 ~ 14950592 (+)
G426312 NA other upstream 1757183 14330048 ~ 14330886 (+)
CI01000304_13578347_13595075 NA other upstream 2509222 13578049 ~ 13595097 (+)
CI01000304_16505174_16506124 NA other downstream 415690 16504764 ~ 16513625 (+)
CI01000304_16761621_16764983 EXOSC8 other downstream 666774 16761372 ~ 16765057 (+)
CI01000304_17009769_17023302 ZDHHC20, ZDHHC20A other downstream 921558 17009769 ~ 17023882 (+)
CI01000304_17315088_17315342 NA other downstream 1225666 17315087 ~ 17315600 (+)
G429050 NA other downstream 1593099 17682271 ~ 17684763 (+)

Expression


Co-expression Network