G427855


Basic Information

Item Value
gene id G427855
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 16067748 ~ 16068983 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU491285
AATGTCTAATATTTTATTGATATTTGCTTCAAATAACAATATGACTGCTTCATCAACCTCAATGTGCCCACTAGACCAGTGTGCAAAAATAAAGAGCAAGAAAAATTTGATATTACCAACATACTAAATAACAACTTCTTTTAATGTATGTGTTACATTGAGACAAATGAGTAAATGTTCAATTACTGAAAAAAGAGAGCTGGTAGGGTGACTCTTTAACAGTTGGAGGCACTAGAGACCCTGAGACCAGAATCTACAAACAGAAAAACTAGATATTATTCACATCTTTTGAATCATAACTTAAACATTCATTTAAATCTGCATGTAAACTCACATAATTTGATTGAAGACATTCTGCTATTAAAAGGGAACGGTGTGGGGTCTAATGAGATTATTTGTGCATAAAGCATGATGTATTGAATTATATTTCAAGTACCCTTGTCATAAAATCAATATTTGTCTTCGTTTTGAAGTAGATTTTCTTCAATAATGGCTAAGCCTTCAGTCAGCATTAAATTATTTTATGGCTTTCTTTTTTAACAAGCATCACATTCAACTGACTATAAAATAAAACTATTAGCATTAAAATAACTGTAACAGCAATTTCATGAAGAAGGGCTTTATAGTGAGAGTACATTCATCTGCTCTTCCGGTATACAGGAATGTCTAGTTAATAGTCTGGCTTCTTTTGATATTGGCCAATAAACATTGAAATAATGCTTCATTTATGTCATGTTGGAATTCTACTATGAGATCTTAAGAAATTAACAATAATTTTGACATGACCTGAATTGAAGCATATTCTGCATATTATGGGAACAAGAGCTACTAATGGAAGGCAAAGATTTGTAAATCTTAAATGTTGCAAAGCTATCCTATATGATAATAAATATAGTGCTTTCTCGATGTCTGGTCCATATCGTGTCTTTTGCAGCAGTTCTAGGAAGGTCAGTGATCAGTCTGGCTGATTATCAATGCCCAGTGTACAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTAGCTCAGAGGNNCTGCCTGGATGACCGAGACCTGCTCGGTACAGATTCTTTTCAATGGTGGTGCTCCACAACTGTCCTCATCCTCCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU491285 True 1141 lncRNA 0.35 2 16067748 16068983

Neighbor

gene id symbol gene type direction distance location
CI01000304_16040037_16043960 NA coding upstream 23788 16040037 ~ 16043960 (+)
CI01000304_15964692_15966904 NA coding upstream 100255 15963916 ~ 15967493 (+)
CI01000304_15896045_15897082 NA coding upstream 169905 15896045 ~ 15897843 (+)
CI01000304_15817532_15846675 PPM1E coding upstream 220856 15814649 ~ 15846892 (+)
CI01000304_15785399_15786785 RAD51C coding upstream 280720 15785399 ~ 15787028 (+)
CI01000304_16109760_16122597 NA coding downstream 38395 16107378 ~ 16122874 (+)
CI01000304_16132778_16137222 MDH2.S, MDH2, MDH2.L coding downstream 62892 16131875 ~ 16137348 (+)
CI01000304_16138794_16144084 NA coding downstream 69811 16138794 ~ 16144237 (+)
CI01000304_16146512_16201457 RYR1, RYR1A coding downstream 77218 16146201 ~ 16202105 (+)
CI01000304_16228517_16231072 CUNH21ORF59, CSSA11H21ORF59, CLG07H21ORF59, C19H21ORF59, C10H21ORF59, CSGR11H21ORF59, CLG14H21ORF59, C16H21ORF59 coding downstream 159534 16228517 ~ 16231553 (+)
G427894 NA non-coding upstream 71474 15994496 ~ 15996274 (+)
G427961 NA non-coding upstream 80138 15986575 ~ 15987610 (+)
G427872 NA non-coding upstream 122336 15883070 ~ 15945412 (+)
G427902 NA non-coding upstream 129646 15922179 ~ 15938102 (+)
G427889 NA non-coding upstream 135791 15866166 ~ 15931957 (+)
G428020 NA non-coding downstream 19086 16088069 ~ 16089172 (+)
G427864 NA non-coding downstream 22417 16091400 ~ 16097493 (+)
G428027 NA non-coding downstream 60724 16129707 ~ 16130080 (+)
G427868 NA non-coding downstream 149464 16218447 ~ 16219937 (+)
G427866 NA non-coding downstream 151047 16220030 ~ 16220408 (+)
G427860 NA other upstream 178157 15885454 ~ 15889591 (+)
G426828 NA other upstream 1117156 14948890 ~ 14950592 (+)
G426312 NA other upstream 1736862 14330048 ~ 14330886 (+)
CI01000304_13578347_13595075 NA other upstream 2488901 13578049 ~ 13595097 (+)
G425718 NA other upstream 3628662 12436554 ~ 12436605 (+)
G428017 NA other downstream 14247 16083230 ~ 16083714 (+)
CI01000304_16505174_16506124 NA other downstream 435879 16504764 ~ 16513625 (+)
CI01000304_16761621_16764983 EXOSC8 other downstream 686963 16761372 ~ 16765057 (+)
CI01000304_17009769_17023302 ZDHHC20, ZDHHC20A other downstream 941747 17009769 ~ 17023882 (+)
CI01000304_17315088_17315342 NA other downstream 1245855 17315087 ~ 17315600 (+)

Expression


Co-expression Network