CI01000304_16109760_16122597


Basic Information

Item Value
gene id CI01000304_16109760_16122597
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 16107378 ~ 16122874 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_16109760_16122597.mRNA
GTTTAAAAAGTGAAATTAAGTGCAGTTCTCATCTTCTATAACGGGACTGTTCATCCTCCCGTGAGTGTAAGAAGAGAGATAGAAAGAGAGAGGATGTGTGTGACACGCACCTCTGATTTCTAGGATTATTAGCTTTGCGTTGAGGCTCTCCTACAGCACCGTCACCAGACGAGACAAAATAAAAGTCCCTACCGCAGTTTTCAAAATAATACAAATTTGTATAAAATAAATTAATTAATGAAATGAATTGCAATATATTCACAAAAATATTAATTTATCAATAAGAATAGTTTTTCTTTATATTATCATATGGGGAATTTATGCTTAGCAGAAAAAAGACAAAGGTCTTGACTCTTGTGACATTTCTTTACACACCATTTGAACAATGGGCGTTTCTTTGTTTATATGGCAATTTGTGCAGTGTTTGAATACGAAAATTTGCGAGTTGTGTGGTTAAAACAACTGTATTGTTTACAGAAGTCCTTAACCCTAATTTCCCAAAGTAGCATATATATAACTATTAACGTAGATTTACTATTTTTTAGAATCAGGTTTAAAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCTATTATAACAATGAAAGACTATAGACTTTGTAACAATTCTCACACAAACTACGTCACTTAATGTTAAAACTGCTACTGGCTCTAGAGAGAGAGAGCGTTTGGCTGTTTTGCTGTGCAGCACATCTGCGCGGATGGAGAAAGCAGAAGGAGAAATAGTGCGCATCAAACACAAACAGATTGGATGGATTGCTAACATTTTTGTTGTTCATTTTGTTGTAACATTTCATAATTGGATTCTCACTTTAAAGTTTATGATACAACTAATTTTCACGCTAAACAAATAATGAAATCCCTATTTGAAATACTTTGATTCGATTTTAAAGAAATATAACATCTGAAGTATCCATACGCCGTTTCGCAACGCTTTCGTATTTCCGATTGCGGTGAATGAAAGACTACATTAAATATATATTTTGTGTGTGTTCCCATTTGCTTAAATAGCAAAAGAAAAACTCCACAATAGTGTTGTCACAACTTTCAAAAAGAGGAAAAAAATAGAGAGAGATTGATAACGGCAGTCAGAAGAGAGAGAAAGATGTCAATTTTACCGGCACAGAAACACCCTCACAGCAGGGTTAACTAGTTTTTTTTTTTTTTTTTTTTTGTAATTTGAAGCAAAGGTAATATAATACAAAGTATAGTGTTATAAATGTGCATACATTAAAAAAAAATGAAAATATAAAAAACTTTGCAGGATTTATTATGCTGATGACCGTTAAAACGCGTCATCACAGTCTGTGAAAAGGGTCCACGGAATTATCATGAGCGAGTGAAGCACATGAAAAACAGAATATCGAGGAACTTCTTTCAAAACTGATTTCCATTTTATTTGACATTTTAATTAGCGAAAGTCAACTGAACTCTACCTGAACGGGTAAATTATAGTGCGATAAATATTAATATTCAGATTAAATGAGCTTGGGCTAATTGTAATTGCTAGCATAGATGTACGTAACGTTAGACACTTAAACTCTACGTTTGAATATAACAGAAGTCAGTAAGATGTCTTCGCTGGTTAGTTCACTTCTCGTTTAACATGTGTTTTTCTTTCTGACTGCAACTGTAATTAGTCAGTAAACAATGTTAAGCAAACATGTGTTAACCTCTCGTTTGGTTAGGTTTCTATGCTAAACCTATTCAACCTAGTATATTATGATTTACAGGTGAGGAAGAAAAAACCTCTGGTAACTTGATCCATGGGACATGAGCATCATGTCAGCGGTTCAGCCAATGCCCTGCCCGGTGCTCTTGGGCACTGTGAAAAGTGGAGGTTTACCAGCCCTCCTACACAGATACACAATTGAGAAAAAAGTAGCAAAAGTGGAGAAAGTCCTCAAAAAAGGTGTGAGAGTTGACAGCATGAACCACCTTGGACAGACACCACTCTTTTGTGCATCTCTCCTCGGCTTTGTCAGTGTAGCAGAGAAACTTCTGCAGTATGGAGCAAACCCAAATCACCGCTGTAATGATGGAAGTACCCCCATCCATGCTGCAGTTTTCTCTTGTAATCCCTGGCTCCTGAGTTCACTGCTGGATGCTGGCGGGGACCTGCGTCTACATGACGATCAGGGCCGGACTCCGAAGGACTGGGCCGAGGCAGGTGCTCAGGAGAACAGCCCGAAGATGCAGCTTCTGCAGTGTAAAGATGCCATTAGACCAATTGTTCTTCCTCATCTACAGATGCTTGCTTTTCTGAAGAGATGCGAGTCTCAAATGCAGAGGCTGTTGCAGACGCATCTGTCTAGGGATGCACATTCCACCCCTACCTCCTCAAAGACTCTCCTGAACTCTCCATCCCTGCTCAAGCGCTTGTCTCCTTGGGGATATGAGCTCAGTCATGAAAACAAAACAAGTTATAAGATGTCTGCCTGTGATATGATGATGATGCAGTGTTTTGGCTATGGAAAGTTATGCTTTGAGAAGCCTGGGTTGAGTCTGGGATTGGCTGCTTCTGTGCCCTTGATATGTGACAGTGACTTAGGTCAAGCTAATGATGAGTCCCTCAATTCGTTTATGTGTGGATCTTTCATACGTATGACCAATTGGAAAGGATGTCGTGTCACTGTTAAAGAGCTACATGATCAGATTTTGCAACAATGTGAAGAAAAAGATGGTCTTCTGGATCTACTCATTTCTGAGCAGGAGTATTGCTGTCAGCTGTCTCACCCGCACCTGCTGCTACTGATGGCTGTGAGTATGTCCGCTGGCCTGGGCAGCACAAAGCTGGTCTATGAGAGGGTGAATGTAGGGTCCCTGTACAGTCTGCTGCACCAAAGGCGGGATGAGTTTCCTCTACTACAGCTGGTTGACCTGTTATCAGTGGTGCTACAGGTGTGTGAGGTGTTAATGTACTTGCATGGCCGATCTCTGGTGCTCCGGGCCCTTTCTTCACACACTGTACTCATAGTACACCCTGGAGTTGCCAAGGTTACAGGCCTCGGGTTCATGGTGCCCAGCATCTTTTCCAATTACAGTGAGGGAACATGCCCCTACACCCCGCCTCCTGTTCCTGTGCCTCTCAGCCTGATCAACTGGGCAGCTCCGGAAGTGATTAGAGGTAGAGCGTGTACAGGAAAAGCTGATCTCTATAGTGTGTGCGCCCTTATACAGGAGATCTATACAGATGCTGTGCCATGGGGCCCCACGGACCAACGCTGGATAAAACGGTCAGTAGAGGCCGGTCAGGCTCTGGAGATAGGAAGCGAGAATAAGAGAAGTGGATGGAACTATTGGTCGGCTCTTCAGTGCATCCCTGGATGGAACACTGACATTAATCAGGAGAGAAAGCAAGACGACGCTGTATATCAGTATAACTGCAGGACTGCAGTACACAATGAGATCCAGAAACATGAACTAGAAAGAATCTACACAGAAGAAGAAAAGTCCACCACAGACACTGATGACCTCCACTGGGATATCTCGCATCGTGACATCACTCCTTTGCATGAATGGCCTATTACCCATCATGCTCCACCCTCTGAACAATCTTGTTCTAACTATATTGATACAGACAAGGCTCTGGAAATCAGTCGCTCTATCTCAAAGCATACTGGCTCCATTGTTCTCAACCTTAAAGTGTCTCAGGTTCTTCTACAGCAAGCTGAGCAGAGTCTGGATAATGTGGAGATGACTCGATTGAGCACCCCATGCTTCGACGAGGTGGATGCAATGGTGAACAGGGTAAACATGGAAAAAGAGTGCAGTGATGGTGTTGGAAAGGCTTTGGGACCACCATCCAAAAATTATATACCCAAGTGGACCATTAATGCAGATGAGGAGGTCAGTCAGTACAGCTCAGCTCAAGATGAGAGCTTTGAGAGCACATCCTATTCAAGTAGTGTACAGGTATGTGCACACAACCTCAAATGTCAGGGCATTAAAGGTGAGGTCAGTGATATGGTGGCCCTAATGGCTCGTGGGCATTTAGGGACATTACTGGGTGCTGTGGGCAGCAGTGACAGTGAGGATGTAGAGGAGCAACAGCTCCACCTACAGGACTGGCAGAGTCACAACAGCAGATGCAGTGTGAACAGCTACCGGGAATCTGAGACCCAGGAAAGCACTGATCTGGAGCAACTGTTCAAGAGTTTTGCTGGTATTCAGAGTGATAGTGAGGAGAGCACAAACTACCACACTATCAATCACACTTATGACGTGACCAATGAAGTGCTGGAGGCTACAAGCCAAACTGAGGATGAAGGAAGCTCAGATAGTTCGGATTATACACAGACACCTTTTGAGCCATCTAGCGTGTTCTACACACCCAAACACCACCTGTCCAAAAGTACATCATCTGGTGTAGAGCATTCTCAGTCACTGAGCTCAGAGGATGAGTTGGACGTCACAGTGGAGGTATGTCGACCCAGCACTTCTCCGGCAGAGGAAAAACAAGATGTAGAAAACAGTCTGAGTGAATACCAGCTTGCTCAAGAGGACTCAAAGAAGTCTGAATCCATTACTCCTGTGCACAGGTACATTCCTACCATCAGTTGTTTGCCAGACCTCGCTGAGATTGCAGACCTCTCCAGCATATCCTATTCACCAGCCCAGCACCAAAAGTGGGTGGAGTCAGCTGAAGCCCCGCTTATTCCTCACATCAGAGGACATCCACCCTGTAACAGCACCCCACGCAGCCCAAAAGGCCGTAGGACACTTCAAGATGTGCAGGTTGGCACTGAGCCTCTCCCTCACCTCCAGAGCCTGTTGGACACATCACCATGGGGCAGTGCTCCATCCCACACTGTCTGCCCAGAGAGTTACGCCACAGCCAGTGCAGGAGACAGCAGCACTACGAATGCCTCTGTGTCTAGCGTCCTGCAGTCTCCAGCGAAAAGAGAAATGTCTAAGGAGGAAACAGACTCTCCCTCCAGCGGTAATGCAGAGTTTACCACTGCCAGCTCTGGAGCCAGACAGACCACTGAGACCAGTGAAGAGATTGAGCATCCTATTGACAAGAATAATGATGTGGATGAGGAAGGAGAGGAAGTAGGTGACGACCCGTCAGATTCTGAACATCAATGTGAGCAAGAGCCCACTGATGAAAAAGTGTTTGACGATGAAGACATCTCAAAGAGGAAGGAAGGGTGTAAGGATGAAAACCTGTGTCAGATACATGACCAGCATCCAGATCTCAACTCTGCTGATATGGATAGTAATTCAAACTCTCAAAAAAGTGATAAGAGTCACAGCCTTGATGAAACTGAGAGGGCAAGCTCCACCCTTGATGAGGAGCTGCAAAGAATGCTTTTAGAAGAAGCCACAGTACAGAGAACCCCCAGAGGCCCAGGGTCACAGGTGTCTCAGTCTGAAATAAAAGGAGAGGGGGATGTGAGAGAGGGCTGTCCAGAAGGAGTCTACATAGAGACTGCAGAGCTCTTGAGCAGACGCCTTCAGAGTCAGTCAAACAGCATTGTTAAAAAGGAGTCAATCTCTCAGATAGCCTCAAGGTCTCTTGCATCTTAATCGTTTCCATTTTAGGTGCTTAAGGCATGTTTGTTTTCCTTTGTTGAATTTACTGTTAAATGAAAAAATTCTTTCCAAATTAAAAAAAAAAAAACAGCTTTCAAACTTGTTCTTAACATATGCACAACTACAGTTTGAACGTGGATGTTACAATTGACTAACAAATGAAAGTTGTTCAAGATAAATGTTTTTAATGATTTGGATGTTCCATTTAAGGTTTTGATGTTGTTGCTACAGAAAATGTACTGCCATTTGTTACGTTTAGTAAAGCATCTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_16109760_16122597.mRNA True 6418 mRNA 0.39 26 16107378 16122874

Neighbor

gene id symbol gene type direction distance location
CI01000304_16040037_16043960 NA coding upstream 63418 16040037 ~ 16043960 (+)
CI01000304_15964692_15966904 NA coding upstream 139885 15963916 ~ 15967493 (+)
CI01000304_15896045_15897082 NA coding upstream 209535 15896045 ~ 15897843 (+)
CI01000304_15817532_15846675 PPM1E coding upstream 260486 15814649 ~ 15846892 (+)
CI01000304_15785399_15786785 RAD51C coding upstream 320350 15785399 ~ 15787028 (+)
CI01000304_16132778_16137222 MDH2.S, MDH2, MDH2.L coding downstream 9001 16131875 ~ 16137348 (+)
CI01000304_16138794_16144084 NA coding downstream 15920 16138794 ~ 16144237 (+)
CI01000304_16146512_16201457 RYR1, RYR1A coding downstream 23327 16146201 ~ 16202105 (+)
CI01000304_16228517_16231072 CUNH21ORF59, CSSA11H21ORF59, CLG07H21ORF59, C19H21ORF59, C10H21ORF59, CSGR11H21ORF59, CLG14H21ORF59, C16H21ORF59 coding downstream 105643 16228517 ~ 16231553 (+)
CI01000304_16238051_16240914 MIS18A coding downstream 115177 16238051 ~ 16241294 (+)
G427864 NA non-coding upstream 9885 16091400 ~ 16097493 (+)
G428020 NA non-coding upstream 18206 16088069 ~ 16089172 (+)
G427855 NA non-coding upstream 38395 16067748 ~ 16068983 (+)
G427894 NA non-coding upstream 111104 15994496 ~ 15996274 (+)
G427961 NA non-coding upstream 119768 15986575 ~ 15987610 (+)
G428027 NA non-coding downstream 6833 16129707 ~ 16130080 (+)
G427868 NA non-coding downstream 95573 16218447 ~ 16219937 (+)
G427866 NA non-coding downstream 97156 16220030 ~ 16220408 (+)
G428069 NA non-coding downstream 299873 16422747 ~ 16422949 (+)
G428099 NA non-coding downstream 352348 16475222 ~ 16555622 (+)
G428017 NA other upstream 23664 16083230 ~ 16083714 (+)
G427860 NA other upstream 217787 15885454 ~ 15889591 (+)
G426828 NA other upstream 1156786 14948890 ~ 14950592 (+)
G426312 NA other upstream 1776492 14330048 ~ 14330886 (+)
CI01000304_13578347_13595075 NA other upstream 2528531 13578049 ~ 13595097 (+)
CI01000304_16505174_16506124 NA other downstream 381988 16504764 ~ 16513625 (+)
CI01000304_16761621_16764983 EXOSC8 other downstream 633072 16761372 ~ 16765057 (+)
CI01000304_17009769_17023302 ZDHHC20, ZDHHC20A other downstream 887856 17009769 ~ 17023882 (+)
CI01000304_17315088_17315342 NA other downstream 1191964 17315087 ~ 17315600 (+)
G429050 NA other downstream 1559397 17682271 ~ 17684763 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location