CI01000304_16138794_16144084


Basic Information

Item Value
gene id CI01000304_16138794_16144084
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 16138794 ~ 16144237 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_16138794_16144084.mRNA
ATGTCTGGTTTAACAGAGGACCGTTTGCGCGTGGTGGCGATCATTCACGCGCTGAAAGCTGTCGGTATCCGCGTGAAAAACTGGAAGAACTTTCTGAATGGCGATTCCAACTATCAACAAACTTTTAGTCAGGTTCTTGGTGGAGGCCTGTGGGTATCTGTCACAACATCTGGACACAGAGGGTCTGTTCAGGAAGACCGGATCCCTGAGTCGTATCCGAGCTCTAAGGATCTGGAGCAGGGAAAGCCAGTCTTCCTTCCCCCGCACGCAGCCCTCCTGCAGCCCTGTGACGTCGCATCTCTCATAAAGCAGTTCCTGCGTGAGCTGCCATCTCCTCTCATCCCCACAGACCTCCAGATCCCTCTGATTCAGGCCCAGGGGCTTGAGATGACACACGACCAGGAAGGAGCGAGAAACAGAACAACTCTGCTCATTACAGCCCTGTTTCCTTCATCCCACGCACGTGCTCTCAGATACCTCTGCACCTTTCTGCGTCAAGCTGCAGAGAGATGCAGTGAGAATAGAATGGATGCGAGCAGCCTGGCCGTTGTTATTGCTCCTAACCTGCTTCAGTGTCCACCTTGCAAACTCACTCTGGACACCGAGAAGCATTTAGACCAGCAGACATCAGTGATCAAATCACTCATTCTTCATGCAGATCGTATTGGTGTTGTGCCATCATGTATGCTAGAGGCTTTAAAAACAACAGGGGGAACAGAGACACCCTCTCCTGCAGGTGGCGCGATATTTAGTAAGAGGACAGGACTCAGTGTTTACAGAAGTCTGAGACGACAACGGAGACGAAGTGTTGGTGAAATATTCGTTGATGCTTTTTCCAAACTGAAGCCATGTCGTACTCCCACTGGACCACCAATTGTCTTAGATGTCACGTCAGTGACTCCTCTCTCAAAAAGCCCCACTCCTCAATCACCAGTTACAGTCAAACGTAAAGCCACTGAGGAATCACTTCCTGAACTTGAAGGATCTGCAAAGAAAAGGCGGTCTCTGCATGACCTAAGAGAGGACATGCCGACAACCATCACTCAGGCAGAAGTCACACCAACACACAAAGAGCCTGAAAACTGTTTAGAAGAACACCAAGAACAGTCCGACTGTAAAAGTGATTCACCACTTATAAATGATGATGTTTCTCCAAGGATACCTCTTATCCTCATTGATGGACCAGGAGGAGTTGTTGGGAATGAGGTGGACGACGACCCGGATCTTCTCAACTGCAGTTTTGTTGAAAGCCCTAGTGACTGTCTAATCATGGGATCTGAAGCCTCTTGCATCCAAAGACAGGACAGTGAGGAACCCTGTGATGATGAATGCTGGACCGTACTTGAAGATGAGAACTTTGATCCGTTAGGAGAATGTGAGGTAAAACAGTCAGTCACTCAAAATGAAGGGTCTCAAGTTAATGCAAGCACAGAAGTAGAGAATGAGCCAGAGGTGAAGCATCCTGAAATGCTGCCACGTAAAGTGTCCAAAAAAGATAAGAGCAGCTCTAAGAAACGTTCTCGTCCTCGTAGATCCATAAGCCTACCTGAGGTGACGCTGGAGTCATGTACTGATGAGATGCCTGATTTGGAAAAGGAAGTTGGTAGAGCTGAAACTGAGATGGATAACACTGTCTGGCCAATGTTTGCAAGTCTGACCCTTTCAAATGAGCAAGAGAGTGTAACTACGGAGAAGAAGGTGGGTATCAGTGAAGCACAAGAGACAAAAGGAAGCATTAAAACACAAAAAAATTATAAACAAGACAAGATAGCAGATTCAACTCTTGGTTTCAAAAGACCCCATCAACGTTTGTCCGTGGCTGAGCGACTTAGAGGTTTTAGTGCTTTGACCTTGCTGCTCCGGACATCACGAGCGGCACCTCAGTTCCGGGAGAAACCGCAGGAATCCCTTCAGAGGGGAGCCACGCGCCTTCGGAGGCAGGGGGCACGCCGATTTGGCCGCTCCATCAGTCATGAGGGCGTATCAGAGAGACCACCAGAGCAGAGCCCTGTGGGATCTCCACCAGCAAATCAGGCTTTCATAGGTATATGTGACGCTAGCCCTGATTCAGGTGTGGAGTCGGTTGATCATGAACCGATTAATGATTTACATCAAGAGATGTGCAAGAGGTCACAGAGTTCGCCCCAAAAACAGACAACAAATGACGTGGATTCTCTGAGTTCGTTGGGAAACCCAAATCAAGATCTGGTTTTGTCTGCAGTGAAGAAAACTGAATGTCAGTTCCTGTGCAAGCAAACAGAACAGAATGTCGAGGAGCTTGATCTTCATAAACTGTTGGATCAGAAGTGCCACATTGGTGGTCATGAGGAAGACGATTGTCAAGATTCAAATGTTTCTCCAGTAGTTCTTACACCTGATTTTGCATCTCCAATGTTCTTCCAGCAGATGGTGCCATTGAATCTTTTTGAAGACACAAGTTCAGTCGAAGACTTCAGAACAGATCACGTCTCTCCTCTGCATGAAAGCGATAAAGAAACCCCCTCATGGCTAAACGCCAGTCCTACATTTGAGTTTCCACCTTTTGCTTCTTTGACACGTGATGGTGTGATTTCTGAAGATGACACAAGTAACAGGTTGCCTTGTGATCTTTCCCCTCCAACCTTTCAGTTTAGACGTCAGACCACTAGAAGGCACTACAGAGACTCTCCCCGCTGGCCCTCGCATGAGGTGCGCATGTCTGCTTGGAACCCGTTGCCACTTTAAACATTTAGTGCTTTCATTTTTATTAGTTAAATAACATTTCCCAACGACTGGGAACTGAATCTGGTTTGTGTAATCATTTAACTATTATTTATGGAACAATGTTTTTATTTGTTTTTTATGTTTGTGAGCTGTCACAAATTTTCTTTGTTCTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_16138794_16144084.mRNA True 2877 mRNA 0.47 10 16138794 16144237

Neighbor

gene id symbol gene type direction distance location
CI01000304_16132778_16137222 MDH2.S, MDH2, MDH2.L coding upstream 1446 16131875 ~ 16137348 (+)
CI01000304_16109760_16122597 NA coding upstream 15920 16107378 ~ 16122874 (+)
CI01000304_16040037_16043960 NA coding upstream 94834 16040037 ~ 16043960 (+)
CI01000304_15964692_15966904 NA coding upstream 171301 15963916 ~ 15967493 (+)
CI01000304_15896045_15897082 NA coding upstream 240951 15896045 ~ 15897843 (+)
CI01000304_16146512_16201457 RYR1, RYR1A coding downstream 1964 16146201 ~ 16202105 (+)
CI01000304_16228517_16231072 CUNH21ORF59, CSSA11H21ORF59, CLG07H21ORF59, C19H21ORF59, C10H21ORF59, CSGR11H21ORF59, CLG14H21ORF59, C16H21ORF59 coding downstream 84280 16228517 ~ 16231553 (+)
CI01000304_16238051_16240914 MIS18A coding downstream 93814 16238051 ~ 16241294 (+)
CI01000304_16255785_16257956 NA coding downstream 111548 16255785 ~ 16258152 (+)
CI01000304_16261912_16276701 B3GLCTB coding downstream 117675 16261912 ~ 16277453 (+)
G428027 NA non-coding upstream 8714 16129707 ~ 16130080 (+)
G427864 NA non-coding upstream 41301 16091400 ~ 16097493 (+)
G428020 NA non-coding upstream 49622 16088069 ~ 16089172 (+)
G427855 NA non-coding upstream 69811 16067748 ~ 16068983 (+)
G427894 NA non-coding upstream 142520 15994496 ~ 15996274 (+)
G427868 NA non-coding downstream 74210 16218447 ~ 16219937 (+)
G427866 NA non-coding downstream 75793 16220030 ~ 16220408 (+)
G428069 NA non-coding downstream 278510 16422747 ~ 16422949 (+)
G428099 NA non-coding downstream 330985 16475222 ~ 16555622 (+)
G428116 NA non-coding downstream 505655 16649892 ~ 16654939 (+)
G428017 NA other upstream 55080 16083230 ~ 16083714 (+)
G427860 NA other upstream 249203 15885454 ~ 15889591 (+)
G426828 NA other upstream 1188202 14948890 ~ 14950592 (+)
G426312 NA other upstream 1807908 14330048 ~ 14330886 (+)
CI01000304_13578347_13595075 NA other upstream 2559947 13578049 ~ 13595097 (+)
CI01000304_16505174_16506124 NA other downstream 360625 16504764 ~ 16513625 (+)
CI01000304_16761621_16764983 EXOSC8 other downstream 611709 16761372 ~ 16765057 (+)
CI01000304_17009769_17023302 ZDHHC20, ZDHHC20A other downstream 866493 17009769 ~ 17023882 (+)
CI01000304_17315088_17315342 NA other downstream 1170601 17315087 ~ 17315600 (+)
G429050 NA other downstream 1538034 17682271 ~ 17684763 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location