G427904


Basic Information

Item Value
gene id G427904
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 15840911 ~ 15851136 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU491334
TCGAATCAGTGAGAAACATATCAGATCAAATTTAGATGCAGTATATATTCTATACATATTCAGTTTCAAAACCAAAGAAAATGATCATCAGGAAGCACACTACCATCCCTAGACAGCGCTACAACCACCTACAAAGAGCTTGTTGTTAAATCCTGTAGAGAAAAATTAGTCAAAGACTCAGTTACCATTCAGAGCAAATATGTCTGGCCAAATATCTAATTTCTTTATATTGGCTAATTGGATTAAGATCAGTTTAATTGTCAGATCTAAGCTTGTACAGGATGTGTAAGTGTAGCCCAGAAGGCTTAATTGAAAACAGAATAAGGCTGACAGGAGATGGTCATAGTTTGAAGTGCCCCTCAGGTGTTGAGGACATGGATAGTAGAGTTTCAGCAGCACAATGTGTGCCTTTATTATCTCCAACATTGGCCTGTTTTTGACAGGCTGTGAAGTGGATACGGAGTAAACTTAACCGCTCTACCACTTTGTTTATTCTAAACTCTACCAGTTTCTTTATTCAGAAATGGCTGCTTAAATGGCTAGTTCACCCAAAAATGAAATTTCTGTCATTAATTACTCACCCTCATGTCGTTCCACATTCGTAAGACCTTCGTTCATTTTGAGAACAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU491334 True 629 lncRNA 0.38 2 15840911 15851136

Neighbor

gene id symbol gene type direction distance location
CI01000304_15785399_15786785 RAD51C coding upstream 53883 15785399 ~ 15787028 (+)
CI01000304_15779082_15779951 ZBTB21 coding upstream 60806 15779082 ~ 15780105 (+)
CI01000304_15776859_15777750 ZBTB21 coding upstream 63143 15776859 ~ 15777768 (+)
CI01000304_15723867_15741978 NA coding upstream 98048 15723867 ~ 15742863 (+)
CI01000304_15500233_15509862 WNT11, WNT11.L, WNT11R coding upstream 330195 15500233 ~ 15510716 (+)
CI01000304_15896045_15897082 NA coding downstream 44909 15896045 ~ 15897843 (+)
CI01000304_15964692_15966904 NA coding downstream 112780 15963916 ~ 15967493 (+)
CI01000304_16040037_16043960 NA coding downstream 188901 16040037 ~ 16043960 (+)
CI01000304_16109760_16122597 NA coding downstream 256242 16107378 ~ 16122874 (+)
CI01000304_16132778_16137222 MDH2.S, MDH2, MDH2.L coding downstream 280739 16131875 ~ 16137348 (+)
CI01000304_15817532_15846675 PPM1E non-coding upstream 22847 15814649 ~ 15846892 (+)
G427917 NA non-coding upstream 26488 15813103 ~ 15814423 (+)
G427915 NA non-coding upstream 28878 15809203 ~ 15812033 (+)
G427906 NA non-coding upstream 99807 15740258 ~ 15741104 (+)
G427844 NA non-coding upstream 125790 15714842 ~ 15715121 (+)
G427889 NA non-coding downstream 15030 15866166 ~ 15931957 (+)
G427872 NA non-coding downstream 31934 15883070 ~ 15945412 (+)
G427902 NA non-coding downstream 71043 15922179 ~ 15938102 (+)
G427961 NA non-coding downstream 135439 15986575 ~ 15987610 (+)
G427894 NA non-coding downstream 143360 15994496 ~ 15996274 (+)
G426828 NA other upstream 890319 14948890 ~ 14950592 (+)
G426312 NA other upstream 1510025 14330048 ~ 14330886 (+)
CI01000304_13578347_13595075 NA other upstream 2262064 13578049 ~ 13595097 (+)
G425718 NA other upstream 3401825 12436554 ~ 12436605 (+)
CI01000304_10555326_10571933 NA other upstream 5285207 10555216 ~ 10572164 (+)
G427860 NA other downstream 34318 15885454 ~ 15889591 (+)
G428017 NA other downstream 232094 16083230 ~ 16083714 (+)
CI01000304_16505174_16506124 NA other downstream 653726 16504764 ~ 16513625 (+)
CI01000304_16761621_16764983 EXOSC8 other downstream 904810 16761372 ~ 16765057 (+)
CI01000304_17009769_17023302 ZDHHC20, ZDHHC20A other downstream 1159594 17009769 ~ 17023882 (+)

Expression


Co-expression Network