RNA id: CI01000304_15723867_15741978.mRNA


Basic Information

Item Value
RNA id CI01000304_15723867_15741978.mRNA
length 2646
RNA type mRNA
GC content 0.47
exon number 6
gene id CI01000304_15723867_15741978
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 15723867 ~ 15742863 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGGCATGGCCCTGTATCTCCAGAGCCTGCTGTATGGCTCGGTTCTGGAACCAGCTAGACAAGGCCGACATTGCGGTGCCGTTGGTTTTCACCAAGTACTCGGACGTGTCCGAAATGCAGCATCTTCACCTGCAGCAGCCCGCCCAGAAGGTCGCCATAGAAACGCAGCCGCTTCACAACGACCACGACGCGGTGACCAAAGGACCTCCAGCCCGGGATGAGAACATCAGCGGATCTGTGATGCGCCAGGACTTTAAACACTGGAATGTTCGCCCGGAGCCCAGCTGCAAGCCCAAGAACGAGTATCATGGCCCTGAGATCCCTTTTAACAACGAGACCCAGTATCAGAAGGACTACAAAGCCTGGCCTATCCCAAAGAGGGGAGATCATCCTTGGATCCCCAAACCCTCTCCGACCATCTCAGTGGGCAATGACCGCATCCCTGATAGATCCAAACACTCAGAGATGATGGACACTGGGGTGGAAAAGAGTCAGATTGCTGACAAGGTGCAAGAGAAGGAGATCCTGTCTAGTGGAAGGAAAAAGAGGCAAGCCAAGAAAGTGACCATGGTTTCTGAAAGCAAAGCTGACATGAAGTTGGACGGGCAGAGCATAGGGGATGCCACCACGACAGAGGGAAAAGGGAGGGCAGCTGTGGATGCCCTCAACCGGCAGATCAAACAAGAAGTCACCTCTGGCAGCTCCTACAGATCAATATGCTTTGGTCTGCAATTTATCTCTGTACGATATATTAGTCGTGCACAAAATCTTGGAAATGCTGAGACGTCCTTACATAATACTTCGCCACCGAAGGATCCAGCAGATGTTACGAATCTACAGGCCACGTTCGCTTATCAGAGCGACGTTCTCAAGGAGTACCGTGATCAACTGGCTAAAGCTCAAGTGGCTAATGACTACCTCACTCAGTATTTGCGATCGCTATCACCGCCTATGCCCAGAAAGGGAAGTGACTTTGATTCTGACGAGAAGAAGTGTGCATTCCTCATGTCATTGCTAACGGGCAAAGCGATCGAGTGGGCCGCTGCAGTTTGGGAAACTGATCGCTTGTTCCAAACATCCTACCCGTACTTCATAAAACAACTTAGAGATGTGTTTGAATACCCAGCAGGGGGCAAGGATGTTTCCACTCGTTTAATGCAACTAACTCAAGGCCGCAAATCCGCCGCTGAATATGCTATTGAGTTCAGAACGCTTGCTGCTCAGAGTGGTTGGAACGATGTGTCACTCAAGGCCCTGTTTCGTCGCAGTTTGAATATGGAGTTACAGGCAGAGCTTGCATGTAAGGGTGAGGAGCACTCCTTTTCTGAGAATGAGTTCAAAGCCTACACAGATGTAAAATCTGTGAAGGTCACCAGGGCCCAGTCTCAGTATAAGATTCCCGATGAGAGAACTGCTCTGGAGACCAGCTACAGCGCCACCTACAGGGGCTACCAGGCCAATCTGCAGCCAGATGACAACAAGGCCCTGGAGAGGAGGAGGATACGCACACTGTATCATGAACCTTATAGAGAGACCAGTAAGGTAGAGAAAACCAGTCTTCCTCGCTCTAAACCGAAAAAGAGCACCACCACATCTGCCACACCTGGCAAACCGCTGAAGAAGTCCAAGGAGAAGCAGGCAACGTCTGTGCGCGGTTCAAAGAAGAAGAGCTCCGAGAACCAGCCGGAGAGCAGAGCGGCGCAGGGCGACAAGGAGAAAAGTAAAGAGATCAACAACAAACTGGCTGAGGCGAAAGAGTAAAAACCATTGCAATTCTTCTCTCATTTATTCTCTTCCTGAAAGGGTGAAAGCTGAACGAAGGCTGCAAAATTATTTAATAAGAGGTTCTCATTCCTTTACTGTTCTATCCATTGCTTCCCCTTCTCTCTGTCTCTCTCTCTATCTCTATCTATCTGATGCACCTCTCGTTTTATTCCTTACTGTATATTTCCAATACCCGCCACCTCTCTCTCTCTCTCTTACTCTTTTTCTTTCTCTTTGAGAGGTCAGTGGGCTGTTTTTAGAACATTTTCAGGGTTGAAATTTGATGTTTTTCTTCTATTTTGCCTCGCAATCTCGCCAGTAATATCAAAGCGTTTGCATTTACTATAGCTCCACCCACTCTCCTCATCTCCACGACAAGGTTTCTATGGCAACCACTCTACTGGTTGGCTAGTGGATGCTCTTATCTTGCATGGAGCCATTGGCTAGAAGCACAGTATGTTTTACTTCCCATCAGATGCACAGACTGGTGGTTTTCATTTATCAAGGGTTATACAATCAAGCTAATTTGTATCCGATAAGCCTTTTGAAATCAAATGTAAATTAGGCAACATATAAAAGCCACAAAGACCAATTTCCCAGTCAAAAAAATCTTTGATAAATGTGCATCTTTGATTTTAAAACTATATTGATCTATTTCCTGCTTGCGTTGCCTGTTTTATGTAGTCAAACACCCCCCAAGCTCCCAAGTGATGTCAAATCACTTTGGTCCTGTGATTATTTTAACTATTTTATTTGTTTTCTTGCTCATTTTTAGAACCATTCCATCATGAAATTGTTGTTGAATCATTACAGGAACAGAATATCTCCAAATAGCTTAAAGGGAACATCAGTATCTCCAAAAAGGCATCTGTCAAGGTCATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU491274 lncRNA upstream 8746 15714842 ~ 15715121 (+) True G427844
TU491273 lncRNA upstream 9531 15713909 ~ 15714336 (+) True G427843
TU491205 lncRNA upstream 16470 15705318 ~ 15707397 (+) True G427777
TU491202 lncRNA upstream 20332 15622304 ~ 15703535 (+) False G427776
TU491204 lncRNA upstream 20332 15701287 ~ 15703535 (+) True G427776
TU491352 lncRNA downstream 66340 15809203 ~ 15812033 (+) True G427915
TU491354 lncRNA downstream 70240 15813103 ~ 15814423 (+) True G427917
TU491329 lncRNA downstream 71786 15814649 ~ 15818064 (+) True CI01000304_15817532_15846675
TU491334 lncRNA downstream 98048 15840911 ~ 15851136 (+) True G427904
TU491319 lncRNA downstream 123303 15866166 ~ 15931957 (+) True G427889
CI01000304_15500233_15509862.mRNA mRNA upstream 213151 15500233 ~ 15510716 (+) True CI01000304_15500233_15509862
CI01000304_15483378_15486113.mRNA mRNA upstream 237481 15483378 ~ 15486386 (+) True CI01000304_15483378_15486113
CI01000304_15472687_15483327.mRNA mRNA upstream 240540 15472687 ~ 15483327 (+) True CI01000304_15472687_15483327
CI01000304_15467093_15471138.mRNA mRNA upstream 252385 15467093 ~ 15471482 (+) True CI01000304_15467093_15471138
CI01000304_15462162_15465511.mRNA mRNA upstream 258356 15462162 ~ 15465511 (+) True CI01000304_15462162_15465511
CI01000304_15776859_15777750.mRNA mRNA downstream 33996 15776859 ~ 15777768 (+) True CI01000304_15776859_15777750
CI01000304_15779082_15779951.mRNA mRNA downstream 36219 15779082 ~ 15780105 (+) True CI01000304_15779082_15779951
CI01000304_15785399_15786785.mRNA mRNA downstream 42536 15785399 ~ 15787028 (+) True CI01000304_15785399_15786785
CI01000304_15817532_15846675.mRNA mRNA downstream 72913 15815776 ~ 15846892 (+) False CI01000304_15817532_15846675
CI01000304_15896045_15897082.mRNA mRNA downstream 153182 15896045 ~ 15897843 (+) True CI01000304_15896045_15897082
TU490061 other upstream 773275 14948890 ~ 14950592 (+) True G426828
TU489538 other upstream 1392981 14330048 ~ 14330886 (+) True G426312
TU489575 other upstream 2145020 13556451 ~ 13573943 (+) True G426349
TU488858 other upstream 3284781 12436554 ~ 12436605 (+) True G425718
TU491290 other downstream 142591 15885454 ~ 15889591 (+) True G427860
TU491458 other downstream 340367 16083230 ~ 16083714 (+) True G428017
TU491561 other downstream 761999 16513714 ~ 16541045 (+) True G428096
TU491635 other downstream 1013083 16755946 ~ 16761111 (+) True G428157
TU491628 other downstream 1267867 17010730 ~ 17017194 (+) False CI01000304_17009769_17023302

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00004285 True 2068 mRNA 0.51 5 NC_007121.7 32561317 ~ 32601380 (+)
bowfin (Amia calva) AMCG00016252 True 1362 mRNA 0.58 4 CM030122.1 13655038 ~ 13675532 (-)