Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU491204 |
| length | 1402 |
| lncRNA type | antisense_over |
| GC content | 0.34 |
| exon number | 2 |
| gene id | G427776 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000304 |
| NCBI id | null |
| chromosome length | 18613800 |
| location | 15622304 ~ 15703535 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU491236 | lncRNA | upstream | 33417 | 15655415 ~ 15667870 (+) | True | G427808 |
| TU491239 | lncRNA | upstream | 42229 | 15658518 ~ 15659058 (+) | True | G427811 |
| TU491175 | lncRNA | upstream | 126069 | 15574948 ~ 15575218 (+) | True | G427752 |
| TU491156 | lncRNA | upstream | 127299 | 15573669 ~ 15573988 (+) | True | G427750 |
| TU491155 | lncRNA | upstream | 132372 | 15568685 ~ 15568915 (+) | True | G427749 |
| TU491205 | lncRNA | downstream | 1783 | 15705318 ~ 15707397 (+) | True | G427777 |
| TU491273 | lncRNA | downstream | 10374 | 15713909 ~ 15714336 (+) | True | G427843 |
| TU491274 | lncRNA | downstream | 11307 | 15714842 ~ 15715121 (+) | True | G427844 |
| TU491336 | lncRNA | downstream | 36723 | 15740258 ~ 15741104 (+) | True | G427906 |
| TU491352 | lncRNA | downstream | 105668 | 15809203 ~ 15812033 (+) | True | G427915 |
| CI01000304_15500233_15509862.mRNA | mRNA | upstream | 190571 | 15500233 ~ 15510716 (+) | True | CI01000304_15500233_15509862 |
| CI01000304_15483378_15486113.mRNA | mRNA | upstream | 214901 | 15483378 ~ 15486386 (+) | True | CI01000304_15483378_15486113 |
| CI01000304_15472687_15483327.mRNA | mRNA | upstream | 217960 | 15472687 ~ 15483327 (+) | True | CI01000304_15472687_15483327 |
| CI01000304_15467093_15471138.mRNA | mRNA | upstream | 229805 | 15467093 ~ 15471482 (+) | True | CI01000304_15467093_15471138 |
| CI01000304_15462162_15465511.mRNA | mRNA | upstream | 235776 | 15462162 ~ 15465511 (+) | True | CI01000304_15462162_15465511 |
| CI01000304_15723867_15741978.mRNA | mRNA | downstream | 20332 | 15723867 ~ 15742863 (+) | True | CI01000304_15723867_15741978 |
| CI01000304_15776859_15777750.mRNA | mRNA | downstream | 73324 | 15776859 ~ 15777768 (+) | True | CI01000304_15776859_15777750 |
| CI01000304_15779082_15779951.mRNA | mRNA | downstream | 75547 | 15779082 ~ 15780105 (+) | True | CI01000304_15779082_15779951 |
| CI01000304_15785399_15786785.mRNA | mRNA | downstream | 81864 | 15785399 ~ 15787028 (+) | True | CI01000304_15785399_15786785 |
| CI01000304_15817532_15846675.mRNA | mRNA | downstream | 112241 | 15815776 ~ 15846892 (+) | False | CI01000304_15817532_15846675 |
| TU490061 | other | upstream | 750695 | 14948890 ~ 14950592 (+) | True | G426828 |
| TU489538 | other | upstream | 1370401 | 14330048 ~ 14330886 (+) | True | G426312 |
| TU489575 | other | upstream | 2122440 | 13556451 ~ 13573943 (+) | True | G426349 |
| TU488858 | other | upstream | 3262201 | 12436554 ~ 12436605 (+) | True | G425718 |
| TU491290 | other | downstream | 181919 | 15885454 ~ 15889591 (+) | True | G427860 |
| TU491458 | other | downstream | 379695 | 16083230 ~ 16083714 (+) | True | G428017 |
| TU491561 | other | downstream | 801327 | 16513714 ~ 16541045 (+) | True | G428096 |
| TU491635 | other | downstream | 1052411 | 16755946 ~ 16761111 (+) | True | G428157 |
| TU491628 | other | downstream | 1307195 | 17010730 ~ 17017194 (+) | False | CI01000304_17009769_17023302 |
