Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU491336 |
| length | 644 |
| lncRNA type | intronic |
| GC content | 0.36 |
| exon number | 2 |
| gene id | G427906 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000304 |
| NCBI id | null |
| chromosome length | 18613800 |
| location | 15740258 ~ 15741104 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU491274 | lncRNA | upstream | 25137 | 15714842 ~ 15715121 (+) | True | G427844 |
| TU491273 | lncRNA | upstream | 25922 | 15713909 ~ 15714336 (+) | True | G427843 |
| TU491205 | lncRNA | upstream | 32861 | 15705318 ~ 15707397 (+) | True | G427777 |
| TU491204 | lncRNA | upstream | 36723 | 15701287 ~ 15703535 (+) | True | G427776 |
| TU491236 | lncRNA | upstream | 72388 | 15655415 ~ 15667870 (+) | True | G427808 |
| TU491352 | lncRNA | downstream | 68099 | 15809203 ~ 15812033 (+) | True | G427915 |
| TU491354 | lncRNA | downstream | 71999 | 15813103 ~ 15814423 (+) | True | G427917 |
| TU491329 | lncRNA | downstream | 73545 | 15814649 ~ 15818064 (+) | True | CI01000304_15817532_15846675 |
| TU491334 | lncRNA | downstream | 99807 | 15840911 ~ 15851136 (+) | True | G427904 |
| TU491319 | lncRNA | downstream | 125062 | 15866166 ~ 15931957 (+) | True | G427889 |
| CI01000304_15500233_15509862.mRNA | mRNA | upstream | 229542 | 15500233 ~ 15510716 (+) | True | CI01000304_15500233_15509862 |
| CI01000304_15483378_15486113.mRNA | mRNA | upstream | 253872 | 15483378 ~ 15486386 (+) | True | CI01000304_15483378_15486113 |
| CI01000304_15472687_15483327.mRNA | mRNA | upstream | 256931 | 15472687 ~ 15483327 (+) | True | CI01000304_15472687_15483327 |
| CI01000304_15467093_15471138.mRNA | mRNA | upstream | 268776 | 15467093 ~ 15471482 (+) | True | CI01000304_15467093_15471138 |
| CI01000304_15462162_15465511.mRNA | mRNA | upstream | 274747 | 15462162 ~ 15465511 (+) | True | CI01000304_15462162_15465511 |
| CI01000304_15776859_15777750.mRNA | mRNA | downstream | 35755 | 15776859 ~ 15777768 (+) | True | CI01000304_15776859_15777750 |
| CI01000304_15779082_15779951.mRNA | mRNA | downstream | 37978 | 15779082 ~ 15780105 (+) | True | CI01000304_15779082_15779951 |
| CI01000304_15785399_15786785.mRNA | mRNA | downstream | 44295 | 15785399 ~ 15787028 (+) | True | CI01000304_15785399_15786785 |
| CI01000304_15817532_15846675.mRNA | mRNA | downstream | 74672 | 15815776 ~ 15846892 (+) | False | CI01000304_15817532_15846675 |
| CI01000304_15896045_15897082.mRNA | mRNA | downstream | 154941 | 15896045 ~ 15897843 (+) | True | CI01000304_15896045_15897082 |
| TU490061 | other | upstream | 789666 | 14948890 ~ 14950592 (+) | True | G426828 |
| TU489538 | other | upstream | 1409372 | 14330048 ~ 14330886 (+) | True | G426312 |
| TU489575 | other | upstream | 2161411 | 13556451 ~ 13573943 (+) | True | G426349 |
| TU488858 | other | upstream | 3301172 | 12436554 ~ 12436605 (+) | True | G425718 |
| TU491290 | other | downstream | 144350 | 15885454 ~ 15889591 (+) | True | G427860 |
| TU491458 | other | downstream | 342126 | 16083230 ~ 16083714 (+) | True | G428017 |
| TU491561 | other | downstream | 763758 | 16513714 ~ 16541045 (+) | True | G428096 |
| TU491635 | other | downstream | 1014842 | 16755946 ~ 16761111 (+) | True | G428157 |
| TU491628 | other | downstream | 1269626 | 17010730 ~ 17017194 (+) | False | CI01000304_17009769_17023302 |
