RNA id: TU491290


Basic Information

Item Value
RNA id TU491290
length 645
RNA type TUCP
GC content 0.54
exon number 5
gene id G427860
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 15885454 ~ 15889591 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGACATGCCCTGATAGAAGTCCTGCACACACTCAGACAGTTCTTCAGCACTGAGATCCTTTTTATTTCCCATGCTCTCTATGAAAGCGCGGCTCTGCTTGTGGATCTCTCTGCCAGGTTTCTGCAAGGTCTTGAGGAACTCCAAGAAGTCTCGTGACACGCGATCGGTCTCAATGCTGGACTGACGGGTAATGGAAGGACTGGGCGTTTTTCCCTCATGGCTCTCTTTTTTAGGTGCCGTGCGGGAGGAGGGGCTGAAGAACTTTTTCACGGTGGTGACCTTACGGGTCTTCTCATTGGTTTTCTTCTCTTCGAACTTGGAGAAGGTGGCAAGAGAGGGCTGAGAGTGGGACTGTGGAGGCTGGGTCTGAGAGGAACTGTGACTGCTGACATAAGCTGCCTCCTCTTCTCGTTGCAGCTTCTCAGCCAGAGCCCAGTCCTCCTGGATCTGTCTCTGCCGGGCTTTCTGGTACTCCTCCCTCCAGCACTTGGAGCACAGGCCCTGCCAGGCAGCATTGCCATAGTAACCGCAGCCTTTCTTACACAGCAGTTCCGATTGGTCCACATGGATCCCCCGTCGCTCCGAACGCTGACTCATCGTGTCCCCTTTGTCTCGTCAGCGGTCTCTTCTCCGGGTCACAATGAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU491334 lncRNA upstream 34318 15840911 ~ 15851136 (+) True G427904
TU491329 lncRNA upstream 67390 15814649 ~ 15818064 (+) True CI01000304_15817532_15846675
TU491354 lncRNA upstream 71031 15813103 ~ 15814423 (+) True G427917
TU491352 lncRNA upstream 73421 15809203 ~ 15812033 (+) True G427915
TU491336 lncRNA upstream 144350 15740258 ~ 15741104 (+) True G427906
TU491332 lncRNA downstream 32588 15922179 ~ 15938102 (+) True G427902
TU491401 lncRNA downstream 96984 15986575 ~ 15987610 (+) True G427961
TU491324 lncRNA downstream 104905 15994496 ~ 15996274 (+) True G427894
TU491285 lncRNA downstream 178157 16067748 ~ 16068983 (+) True G427855
TU491461 lncRNA downstream 198478 16088069 ~ 16089172 (+) True G428020
CI01000304_15817532_15846675.mRNA mRNA upstream 38562 15815776 ~ 15846892 (+) False CI01000304_15817532_15846675
CI01000304_15785399_15786785.mRNA mRNA upstream 98426 15785399 ~ 15787028 (+) True CI01000304_15785399_15786785
CI01000304_15779082_15779951.mRNA mRNA upstream 105349 15779082 ~ 15780105 (+) True CI01000304_15779082_15779951
CI01000304_15776859_15777750.mRNA mRNA upstream 107686 15776859 ~ 15777768 (+) True CI01000304_15776859_15777750
CI01000304_15723867_15741978.mRNA mRNA upstream 142591 15723867 ~ 15742863 (+) True CI01000304_15723867_15741978
CI01000304_15896045_15897082.mRNA mRNA downstream 6454 15896045 ~ 15897843 (+) True CI01000304_15896045_15897082
CI01000304_15964692_15966904.mRNA mRNA downstream 74325 15963916 ~ 15967493 (+) True CI01000304_15964692_15966904
CI01000304_16040037_16043960.mRNA mRNA downstream 150446 16040037 ~ 16043960 (+) True CI01000304_16040037_16043960
CI01000304_16109760_16122597.mRNA mRNA downstream 217787 16107378 ~ 16122874 (+) True CI01000304_16109760_16122597
CI01000304_16132778_16137222.mRNA mRNA downstream 242284 16131875 ~ 16137348 (+) True CI01000304_16132778_16137222
TU490061 other upstream 934862 14948890 ~ 14950592 (+) True G426828
TU489538 other upstream 1554568 14330048 ~ 14330886 (+) True G426312
TU489575 other upstream 2306607 13556451 ~ 13573943 (+) True G426349
TU488854 other upstream 3446368 12434972 ~ 12439086 (+) False CI01000304_12437868_12439019
TU491458 other downstream 193639 16083230 ~ 16083714 (+) True G428017
TU491561 other downstream 615271 16513714 ~ 16541045 (+) True G428096
TU491635 other downstream 866355 16755946 ~ 16761111 (+) True G428157
TU491628 other downstream 1121139 17010730 ~ 17017194 (+) False CI01000304_17009769_17023302
TU491773 other downstream 1425247 17314838 ~ 17314930 (+) True G428289

Expression Profile