RNA id: TU491352


Basic Information

Item Value
RNA id TU491352
length 2454
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G427915
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 15809203 ~ 15812033 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCAGCTCACAGACACACCATATTCATGTTGACTGTATATTTCACAATGTTTTTTGGTTCACATCACATTTACAGCACAATTTGATACATGTACACCTTAAATGGATAGTTCTCCCAAAAATTAAGATTCATTTTCTTCTGTGGAACATAAAAGAAGATATTTTGAAGAACCAAACAGTTATGGTTAACATTGACCTCCAGACTAAAAGCTTCACATCGAATCCAAGAAATAGCAATACAGTATTGATAATATTGATGTTATTGTTGTCGTTGTTGTTATAAATACTAGAATACAAAAGTAATCCGTCGTAAATATTTTACTTTTTCCATTTTAGGCCAGACTGGTTTGAAAAAAAGAAAACAAAATATTTGCCATTATGTAAATTTAAAAAAAGCAAAACCCACAATGCACCTTAAAGTCCCCCTGAAATCAACATTTGTAGCTTTTAGTATGAATATGTTAGCCTTAAGGTTATAAATAATCTGGTGTGTTACAAAACAATGACAAAATTCACATTTAGGAGATATAAGCAGCATTCAAAACGTACAGTCTCTCACTTCCGCTAAAATGGATCACAGATTTTCATGACAAAAGAAAAGAATTCATTTGAAATGGAAACTTTTTGTAACCTTATAATTGTCTTTACTGTCACTTTTGAACAATCTAATGTGTGCTGAATAAAAGTATTAATTACTTTCTGTCAAAAAAAGTACTGTTTTTTGAACATAGTTTATATTTGTACGCCTAACTTTTGAATGGTAGTCTATATTTGCATTTTTGTTAGCATTGGTGTATTTATACTTGCCTATCACACTTCTGCCCTTGAAAAAAAGTCATAATGTGTATTGCTTTGCATTTCTATATTATCTTAAACTTCCCTTATTCGTATTTCAAATTGCACAAAGTGCACAGCTTTTTCATATGAACTGGATTAGATCAAATAATCACGCTCCTTGTTACCAGGCCTAGTTAACAACAGAAGCTTATAACGGAAAGATTGCAGGTTCAATCTCAAGTATTGTTGACCTAGGACCTGGATCCTAGTTACAATTCTGTGCCATCACCACTGACTCTTAAAGACACTTAACCCCAGGCCACTTCTTCATCCAGTGTTAGTCCTCAAGATGAAACAGCATCTTCTAAATGCAACCAGAACATTATTCCAGTTGTACCTTTTCAAGTGTCATAAAGTGTGACTATGGCCTCCAGTTGTTGTTCTGCTCTGTTAAGCTGTTGGTTTGTCAGTGCTGGGTTCTTTCTGTTGAATTGCAGATGCTCATACTTTATGAACCCCTGATTCTTGCTGTAACATTGCTGTGAAAGTCATCGATTGCAGTTTTGGGTCATGACATTGACTTAGTTCCAGTTGAGTGAATGTCAAGACCCCTGAGTGACATATTTCAGTTTCCAATGGCTGAAGTTAGAGCACATTTGCAGCTTACATGTCTCTACGTCCAGCAGTCTTTAGATAGCTAATCCAATCTATAGTCGGGTTATGTAACTCTATCACATCAGTATGTTGCCATATTGTGTTTATGTATACAGCATGCTATATCCGTATAGCTGTAAGATGGTCTTCATATGGTTATTGAATCAGGATGCTGTATGCAAATGCAATAATAAGCAAAATGTTGTAAAAATGTAGAGCAGGTTCAGGTTAAACTCCTCCTTGGTGAGAAACTTTAGGACTGTTTTGACTCTCCAGGGGCTCAAATCATATTTCGGTGTCCCTGATAGCTCACTGAACATAAGCAACTTGACACATATATTAGGCTGTTTGTTAGGAATTTAGGAATTTTTATCTATAAAAAAATGAAAATGAGCAAATGTCATGTGTCCAATGCCATGGACTGTAGTCTTGATTTCTGTCCAGGTATGGGTCACTTATGCTTGTTGCATTTTATGCCATTTCTGTCATATTTTACTATCTTTTGTCTGTGGAGCACAAAAGAAGAGGTTTATAATAGAAGTTAGGTTTATGTCCATACAATAAAAGTCATTTGGGTCCAGGGTTGTTTTGGACCCCATTGACTTTCATTGTATGGACAAAAATAGTTGAAACATTTTTCAAAATATCTTTGTTTGTGTTTCACAGAAGAAAGAACAACATGATGACAGACGTTTTATTTTTGGGAGAACTAGCCATTTACTAGAGCCAGGTAAACGCATTCTCTATGATGGAAGAAATTCAAAAAAGAAAAGTTTAACTTCACATCTGGGTCAGGACGTGATAGGATTTTGTGGACATCATGATCCAGTTCTGGCCCATCAAACCCACTTTAGTCAAACAGCTTAGTGTCTGCCGTTTGGTGTACTATGACAGTGGTTCCTGCCACCACTGAGAAAATCTGCATTATTGACGCCACTGGCATCTACATATTTAATACACTGGCCCCGCTATTGACTTTCCAGGCTAACGCTTCGCTTGTACACAAAGCCGAGCGCCCCCGCCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU491336 lncRNA upstream 68099 15740258 ~ 15741104 (+) True G427906
TU491274 lncRNA upstream 94082 15714842 ~ 15715121 (+) True G427844
TU491273 lncRNA upstream 94867 15713909 ~ 15714336 (+) True G427843
TU491205 lncRNA upstream 101806 15705318 ~ 15707397 (+) True G427777
TU491204 lncRNA upstream 105668 15701287 ~ 15703535 (+) True G427776
TU491354 lncRNA downstream 1070 15813103 ~ 15814423 (+) True G427917
TU491329 lncRNA downstream 2616 15814649 ~ 15818064 (+) True CI01000304_15817532_15846675
TU491334 lncRNA downstream 28878 15840911 ~ 15851136 (+) True G427904
TU491319 lncRNA downstream 54133 15866166 ~ 15931957 (+) True G427889
TU491302 lncRNA downstream 71037 15883070 ~ 15945412 (+) True G427872
CI01000304_15785399_15786785.mRNA mRNA upstream 22175 15785399 ~ 15787028 (+) True CI01000304_15785399_15786785
CI01000304_15779082_15779951.mRNA mRNA upstream 29098 15779082 ~ 15780105 (+) True CI01000304_15779082_15779951
CI01000304_15776859_15777750.mRNA mRNA upstream 31435 15776859 ~ 15777768 (+) True CI01000304_15776859_15777750
CI01000304_15723867_15741978.mRNA mRNA upstream 66340 15723867 ~ 15742863 (+) True CI01000304_15723867_15741978
CI01000304_15500233_15509862.mRNA mRNA upstream 298487 15500233 ~ 15510716 (+) True CI01000304_15500233_15509862
CI01000304_15817532_15846675.mRNA mRNA downstream 3743 15815776 ~ 15846892 (+) False CI01000304_15817532_15846675
CI01000304_15896045_15897082.mRNA mRNA downstream 84012 15896045 ~ 15897843 (+) True CI01000304_15896045_15897082
CI01000304_15964692_15966904.mRNA mRNA downstream 151883 15963916 ~ 15967493 (+) True CI01000304_15964692_15966904
CI01000304_16040037_16043960.mRNA mRNA downstream 228004 16040037 ~ 16043960 (+) True CI01000304_16040037_16043960
CI01000304_16109760_16122597.mRNA mRNA downstream 295345 16107378 ~ 16122874 (+) True CI01000304_16109760_16122597
TU490061 other upstream 858611 14948890 ~ 14950592 (+) True G426828
TU489538 other upstream 1478317 14330048 ~ 14330886 (+) True G426312
TU489575 other upstream 2230356 13556451 ~ 13573943 (+) True G426349
TU488858 other upstream 3370117 12436554 ~ 12436605 (+) True G425718
TU491290 other downstream 73421 15885454 ~ 15889591 (+) True G427860
TU491458 other downstream 271197 16083230 ~ 16083714 (+) True G428017
TU491561 other downstream 692829 16513714 ~ 16541045 (+) True G428096
TU491635 other downstream 943913 16755946 ~ 16761111 (+) True G428157
TU491628 other downstream 1198697 17010730 ~ 17017194 (+) False CI01000304_17009769_17023302

Expression Profile