RNA id: CI01000304_16040037_16043960.mRNA



Basic Information


Item Value
RNA id CI01000304_16040037_16043960.mRNA
length 513
RNA type mRNA
GC content 0.47
exon number 5
gene id CI01000304_16040037_16043960
representative True

Chromosome Information


Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 16040037 ~ 16043960 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GCACCAAAGAAGGCCAAGAAGAAGGAAGCTGCCAGCTCCAATGTGTTTAGCATGTTTGAGCAGTCACAGATCCAGGAGTTTAAAGAGGCTTTCACCATCATGGACCAGAACAGAGATGGCTTTATTGACAAAAACGACCTGAGGGACACATTTGCTGCTCTGGGTACAGACCCCGAGGAGACTATTCTTAATGCCTTTAAGATCTTCGACCCAGAGGGCACAGGAATCCTTAAAGGAGATGAGATCAAATATCACCTTATGTCCCAGGCTGACAAATTTACTGAGGCTGAGGTCAGGATAAAGGTCTTGTGGTCACAAGTGTTTGTTATTCACTCTTCATACCCAACAGAGTCCGGCTACTCTCTGTCCGGGGTAAGAGGAGAGGAGGGTTTGGCAGCACCAACACTTTTAGCACTGCCTGTTAGCATGAAGTCTGCCAGGAGATCTATTCCAGAACCAGAGTCCAACAGAGTATCTGGGCAGAGCGATGAAAGGAAAGAAACAAAAATAAAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU491324 lncRNA upstream 43763 15994496 ~ 15996274 (+) True G427894
TU491401 lncRNA upstream 52427 15986575 ~ 15987610 (+) True G427961
TU491302 lncRNA upstream 94625 15883070 ~ 15945412 (+) True G427872
TU491332 lncRNA upstream 101935 15922179 ~ 15938102 (+) True G427902
TU491319 lncRNA upstream 108080 15866166 ~ 15931957 (+) True G427889
TU491285 lncRNA downstream 23788 16067748 ~ 16068983 (+) True G427855
TU491461 lncRNA downstream 44109 16088069 ~ 16089172 (+) True G428020
TU491294 lncRNA downstream 47440 16091400 ~ 16097493 (+) True G427864
TU491468 lncRNA downstream 85747 16129707 ~ 16130080 (+) True G428027
TU491298 lncRNA downstream 174487 16218447 ~ 16219937 (+) True G427868
CI01000304_15964692_15966904.mRNA mRNA upstream 72544 15963916 ~ 15967493 (+) True CI01000304_15964692_15966904
CI01000304_15896045_15897082.mRNA mRNA upstream 142194 15896045 ~ 15897843 (+) True CI01000304_15896045_15897082
CI01000304_15817532_15846675.mRNA mRNA upstream 193145 15815776 ~ 15846892 (+) False CI01000304_15817532_15846675
CI01000304_15785399_15786785.mRNA mRNA upstream 253009 15785399 ~ 15787028 (+) True CI01000304_15785399_15786785
CI01000304_15779082_15779951.mRNA mRNA upstream 259932 15779082 ~ 15780105 (+) True CI01000304_15779082_15779951
CI01000304_16109760_16122597.mRNA mRNA downstream 63418 16107378 ~ 16122874 (+) True CI01000304_16109760_16122597
CI01000304_16132778_16137222.mRNA mRNA downstream 87915 16131875 ~ 16137348 (+) True CI01000304_16132778_16137222
CI01000304_16138794_16144084.mRNA mRNA downstream 94834 16138794 ~ 16144237 (+) True CI01000304_16138794_16144084
CI01000304_16146512_16201457.mRNA mRNA downstream 102241 16146201 ~ 16202105 (+) True CI01000304_16146512_16201457
CI01000304_16228517_16231072.mRNA mRNA downstream 184557 16228517 ~ 16231553 (+) True CI01000304_16228517_16231072
TU491290 other upstream 150446 15885454 ~ 15889591 (+) True G427860
TU490061 other upstream 1089445 14948890 ~ 14950592 (+) True G426828
TU489538 other upstream 1709151 14330048 ~ 14330886 (+) True G426312
TU489575 other upstream 2461190 13556451 ~ 13573943 (+) True G426349
TU488852 other upstream 3600951 12437804 ~ 12439086 (+) True CI01000304_12437868_12439019
TU491458 other downstream 39270 16083230 ~ 16083714 (+) True G428017
TU491561 other downstream 460902 16513714 ~ 16541045 (+) True G428096
TU491635 other downstream 711986 16755946 ~ 16761111 (+) True G428157
TU491628 other downstream 966770 17010730 ~ 17017194 (+) False CI01000304_17009769_17023302
TU491773 other downstream 1270878 17314838 ~ 17314930 (+) True G428289

Expression Profile