RNA id: TU491628


Basic Information

Item Value
RNA id TU491628
length 611
RNA type TUCP
GC content 0.47
exon number 7
gene id CI01000304_17009769_17023302
representative False

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 17009769 ~ 17023882 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTCGGATTAAAGATGGCGCCCTCTCAGGCGGTAAGATGCTGTCAACGGGGCTTATCCTGGATACCTGTGATTTTTATCAACCTGGTCGTGTGCTGGTCCTACTACGCTTACGTGGTGGAGCTCTGTATATACACAATCACTAACACTGAGGAGCAAGTTTTTTATCTGATAGTGTTTCACCTCTGTTTCTTCATGTTCGTATGGTCCTACTGGAAGACCATCATATCCAAGCCTACCACCCCCTCAAAAGAGTTCTGTCTTCCTAAGGCTGAAAAAGAGCTGTATGAGAAAGAGGAGAGACCAGAGGCCCAGCAGGAAATCCTGAAAAGAGTGGCCAGAGATTTACCCGTATATACACGCACAGGATCTGGGGCTATCCGTTATTGTGATCACTGTCAGCTGATCAAACCAGACAGATGTCATCACTGCTCTACCTGCGACAAATGTGTGCTGAAAATGGATCACCACTGTCCATGGGTTAATAACTGTGTTGGATTCTCCAACTACAAGTTCTTTGTGCTGTTCCTGGCGTACTCGATGCTGTACTGCGTCTACATCGCCGCCACAGTTTTGCAGTACTTTATCAAGTTCTGGACAGTAAGTCCACACAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU491713 lncRNA upstream 156963 16853550 ~ 16853767 (+) True G428232
TU491682 lncRNA upstream 218107 16792293 ~ 16792623 (+) True G428201
TU491678 lncRNA upstream 229735 16779363 ~ 16780995 (+) True G428197
TU491669 lncRNA upstream 278902 16731607 ~ 16731828 (+) True G428188
TU491583 lncRNA upstream 355791 16649892 ~ 16654939 (+) True G428116
TU491629 lncRNA downstream 3688 17021541 ~ 17021924 (+) True G428151
TU491631 lncRNA downstream 6863 17024057 ~ 17025288 (+) True G428153
TU491739 lncRNA downstream 25009 17042203 ~ 17042429 (+) True G428255
TU491744 lncRNA downstream 30838 17048032 ~ 17049987 (+) True G428260
TU491746 lncRNA downstream 33201 17050395 ~ 17050678 (+) True G428262
CI01000304_16975753_16997470.mRNA mRNA upstream 13244 16975254 ~ 16997486 (+) True CI01000304_16975753_16997470
CI01000304_16969702_16974059.mRNA mRNA upstream 36301 16969702 ~ 16974429 (+) True CI01000304_16969702_16974059
CI01000304_16954628_16965188.mRNA mRNA upstream 45130 16954628 ~ 16965600 (+) True CI01000304_16954628_16965188
CI01000304_16914506_16925875.mRNA mRNA upstream 84604 16914506 ~ 16926126 (+) True CI01000304_16914506_16925875
CI01000304_16889868_16901389.mRNA mRNA upstream 108604 16889868 ~ 16902126 (+) True CI01000304_16889868_16901389
CI01000304_17054994_17056008.mRNA mRNA downstream 37655 17054849 ~ 17057077 (+) False CI01000304_17054994_17056008
CI01000304_17210568_17214463.mRNA mRNA downstream 193374 17210568 ~ 17214638 (+) True CI01000304_17210568_17214463
CI01000304_17266905_17272656.mRNA mRNA downstream 249050 17266244 ~ 17272740 (+) True CI01000304_17266905_17272656
CI01000304_17290004_17290901.mRNA mRNA downstream 272810 17290004 ~ 17292234 (+) True CI01000304_17290004_17290901
CI01000304_17315088_17315342.mRNA mRNA downstream 297894 17315088 ~ 17315366 (+) False CI01000304_17315088_17315342
TU491635 other upstream 249078 16755946 ~ 16761111 (+) True G428157
TU491561 other upstream 469685 16513714 ~ 16541045 (+) True G428096
TU491458 other upstream 927016 16083230 ~ 16083714 (+) True G428017
TU491290 other upstream 1121139 15885454 ~ 15889591 (+) True G427860
TU490061 other upstream 2060138 14948890 ~ 14950592 (+) True G426828
TU491773 other downstream 297644 17314838 ~ 17314930 (+) True G428289
TU492630 other downstream 665077 17682271 ~ 17684763 (+) True G429050
TU492542 other downstream 686116 17703310 ~ 17704096 (+) True CI01000304_17698564_17703891

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00004359 True 1730 mRNA 0.45 13 NC_007121.7 35554219 ~ 35580086 (+)