RNA id: CI01000304_17054994_17056008.mRNA



Basic Information


Item Value
RNA id CI01000304_17054994_17056008.mRNA
length 1493
RNA type mRNA
GC content 0.40
exon number 2
gene id CI01000304_17054994_17056008
representative False

Chromosome Information


Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 17054849 ~ 17059151 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TTATAAATAGCAGCCCCGTTGACAAAATTCCGTCAATGACGTAGTGCACGCGCGTAGTTGAGTAGGTGATGCTTTTTAGTGAATGAGTCCCCCTCCCTCTGCAGCTTACTAGTACTATCAGATCTCTATAAAAAGAGCACGGTAGATGGAAAAGCGCTTGAGAGCTGCTTGTTTCTACCAGGAAAAAGAAGACGAGACAGACAGTGGTCCATATGGAGACACTCAGGCGAGAAAGAACTTCTCATTACGCAGTACACCGTGCCATCCTACTGGAGCGCCAACATCTAATAGACGAGGTACTAGAAAACGGACAGCCGTCATAAATTCGACTGCATTTTTGACGAGGGCTCCTATATTTCAAGAGACTCACTGCACATTGAATAACGACAAAACAGTCAATCTAAAAACGCATATTTGTAAGTGAAAAAACAAGCACAAAGTCGCTTGTAATAACTGGACGTGGCAACACTCCCCCTTCCCTATCTTTCCGGTTGATGCCCTCGTACCTCCACTAACCGTCGTTTTATTTTTGCCGTTCTATTCAACAAAGTCGGGTGTTTTTTTTTTGTGTTTACCCCCACCCCTCCTTCCTCCCCTCTTGACTGTATGCTATGAATTTCCTTCCTACCTAACGTTTCCGTTCACCTTTTTTTTCCACACTGATTCTGTGACGTGTATTCAGGCGTTGAAGTCAGGTCTGCGTCACTCTTGCGCACTTTGCAGATGATTCGTAGTCACCTACTGTAACCCTTTAAAGAGACAGCGCGCGCTCAGCTACAAACACACACACACACACACACACACACACACACACACAAATGACTGCAGCACAAACCTTTTATTTTTCGCGGGGGTGTTAAAGAAGGGAGTGGGCGTCCGTTTTTATTCATTGACGACGACACCTTTATTCATTCTTTGAAAATGAATGACTGTAGCCTACAATTGAATTAGCACAGCCAACGACACTAACGACCAATATTTTGAGTAGCTGAAACAAGTACACAGAATGTTTTTTTAACTCTTAAAGGAACAGTGCACACAAAAATGATTAGAATAATTATTTAGTCAAACTTATTTTGATTTATTTTTCATGTGGAATTCAAAATGAGATGTTTGGCACAATAACAGTCAGCATTCACTGTAATTGTATGTACAAATATGCTATGAAAGTGAATGGTGACTGAGGTTGCCAGTTCATTATATTCATTTTAGGTTGAACTAGGTTATATTGTCTGAAGCGTAGAACTCTTAAAAGTCCAATAGAAAAGATTCCTAGGATTAATAACTTAATGAGTCATATATTTAACCATAATGCTGTGAAAAATACCTAGGACTGCTATATTAAATGGGTCGTTCATTCAAATTTCAGCACCATGGACAGCGGTTAGTGTTATGTCAAGGCTACTTCTTCCTTTCTCAAAACTGAATACAGTTAAGCAGACAAATATTGGGCTCCCAGTAAGAGCCACTAAAAGAAATAAGTATTAGGTGTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU491746 lncRNA upstream 4171 17050395 ~ 17050678 (+) True G428262
TU491744 lncRNA upstream 4862 17048032 ~ 17049987 (+) True G428260
TU491739 lncRNA upstream 12420 17042203 ~ 17042429 (+) True G428255
TU491631 lncRNA upstream 29561 17024057 ~ 17025288 (+) True G428153
TU491629 lncRNA upstream 30967 17021541 ~ 17021924 (+) True G428151
TU491663 lncRNA downstream 68944 17126021 ~ 17134275 (+) True G428182
TU491795 lncRNA downstream 229153 17286230 ~ 17286443 (+) True G428307
TU491796 lncRNA downstream 229674 17286751 ~ 17287056 (+) True G428308
TU491807 lncRNA downstream 241125 17298202 ~ 17298668 (+) True G428316
TU492475 lncRNA downstream 281406 17338483 ~ 17338687 (+) True G428916
CI01000304_17009769_17023302.mRNA mRNA upstream 31259 17009769 ~ 17023590 (+) False CI01000304_17009769_17023302
CI01000304_16975753_16997470.mRNA mRNA upstream 57363 16975254 ~ 16997486 (+) True CI01000304_16975753_16997470
CI01000304_16969702_16974059.mRNA mRNA upstream 80420 16969702 ~ 16974429 (+) True CI01000304_16969702_16974059
CI01000304_16954628_16965188.mRNA mRNA upstream 89249 16954628 ~ 16965600 (+) True CI01000304_16954628_16965188
CI01000304_16914506_16925875.mRNA mRNA upstream 128723 16914506 ~ 16926126 (+) True CI01000304_16914506_16925875
CI01000304_17210568_17214463.mRNA mRNA downstream 153491 17210568 ~ 17214638 (+) True CI01000304_17210568_17214463
CI01000304_17266905_17272656.mRNA mRNA downstream 209167 17266244 ~ 17272740 (+) True CI01000304_17266905_17272656
CI01000304_17290004_17290901.mRNA mRNA downstream 232927 17290004 ~ 17292234 (+) True CI01000304_17290004_17290901
CI01000304_17315088_17315342.mRNA mRNA downstream 258011 17315088 ~ 17315366 (+) False CI01000304_17315088_17315342
CI01000304_17453343_17454323.mRNA mRNA downstream 395875 17452952 ~ 17454439 (+) True CI01000304_17453343_17454323
TU491628 other upstream 37655 17010730 ~ 17017194 (+) False CI01000304_17009769_17023302
TU491635 other upstream 293197 16755946 ~ 16761111 (+) True G428157
TU491561 other upstream 513804 16513714 ~ 16541045 (+) True G428096
TU491458 other upstream 971135 16083230 ~ 16083714 (+) True G428017
TU491290 other upstream 1165258 15885454 ~ 15889591 (+) True G427860
TU491773 other downstream 257761 17314838 ~ 17314930 (+) True G428289
TU492630 other downstream 625194 17682271 ~ 17684763 (+) True G429050
TU492542 other downstream 646233 17703310 ~ 17704096 (+) True CI01000304_17698564_17703891

Expression Profile