RNA id: TU491746


Basic Information

Item Value
RNA id TU491746
length 284
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G428262
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 17050395 ~ 17050678 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTTTTTGTATTGATCCGAGTGCATTCTGTGTGGCGAATACAGAGCGAGACACAAAAAAGAAAAGTGAGAAGAGAGACAGAGATAGAGGGAGCAGTTACAGTCTCCAGACATCAAGTCTCGCCTTTTGAATCAATCTTCAGAAAATTCTGATATCATTATCGGCGTCACTAGCAAATTGAGGAACATCTGCAAATGCGGGGAGAGAAACAATACAGTGACAACGTGGAAAGATACGAGAAGCAGGGAGAGAGAAAAGGGAGAGAGGGAGGGAGGTGACAGTTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU491744 lncRNA upstream 408 17048032 ~ 17049987 (+) True G428260
TU491739 lncRNA upstream 7966 17042203 ~ 17042429 (+) True G428255
TU491631 lncRNA upstream 25107 17024057 ~ 17025288 (+) True G428153
TU491629 lncRNA upstream 26513 17021541 ~ 17021924 (+) True G428151
TU491713 lncRNA upstream 196628 16853550 ~ 16853767 (+) True G428232
TU491638 lncRNA downstream 4350 17055028 ~ 17059151 (+) True CI01000304_17054994_17056008
TU491663 lncRNA downstream 75343 17126021 ~ 17134275 (+) True G428182
TU491795 lncRNA downstream 235552 17286230 ~ 17286443 (+) True G428307
TU491796 lncRNA downstream 236073 17286751 ~ 17287056 (+) True G428308
TU491807 lncRNA downstream 247524 17298202 ~ 17298668 (+) True G428316
CI01000304_17009769_17023302.mRNA mRNA upstream 26805 17009769 ~ 17023590 (+) False CI01000304_17009769_17023302
CI01000304_16975753_16997470.mRNA mRNA upstream 52909 16975254 ~ 16997486 (+) True CI01000304_16975753_16997470
CI01000304_16969702_16974059.mRNA mRNA upstream 75966 16969702 ~ 16974429 (+) True CI01000304_16969702_16974059
CI01000304_16954628_16965188.mRNA mRNA upstream 84795 16954628 ~ 16965600 (+) True CI01000304_16954628_16965188
CI01000304_16914506_16925875.mRNA mRNA upstream 124269 16914506 ~ 16926126 (+) True CI01000304_16914506_16925875
CI01000304_17054994_17056008.mRNA mRNA downstream 4171 17054849 ~ 17057077 (+) False CI01000304_17054994_17056008
CI01000304_17210568_17214463.mRNA mRNA downstream 159890 17210568 ~ 17214638 (+) True CI01000304_17210568_17214463
CI01000304_17266905_17272656.mRNA mRNA downstream 215566 17266244 ~ 17272740 (+) True CI01000304_17266905_17272656
CI01000304_17290004_17290901.mRNA mRNA downstream 239326 17290004 ~ 17292234 (+) True CI01000304_17290004_17290901
CI01000304_17315088_17315342.mRNA mRNA downstream 264410 17315088 ~ 17315366 (+) False CI01000304_17315088_17315342
TU491628 other upstream 33201 17010730 ~ 17017194 (+) False CI01000304_17009769_17023302
TU491635 other upstream 288743 16755946 ~ 16761111 (+) True G428157
TU491561 other upstream 509350 16513714 ~ 16541045 (+) True G428096
TU491458 other upstream 966681 16083230 ~ 16083714 (+) True G428017
TU491290 other upstream 1160804 15885454 ~ 15889591 (+) True G427860
TU491773 other downstream 264160 17314838 ~ 17314930 (+) True G428289
TU492630 other downstream 631593 17682271 ~ 17684763 (+) True G429050
TU492542 other downstream 652632 17703310 ~ 17704096 (+) True CI01000304_17698564_17703891

Expression Profile