RNA id: CI01000304_17315088_17315342.mRNA


Basic Information

Item Value
RNA id CI01000304_17315088_17315342.mRNA
length 279
RNA type mRNA
GC content 0.54
exon number 1
gene id CI01000304_17315088_17315342
representative False

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 17315087 ~ 17315600 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGGCATCGGCTCCTTCTCCATCCCCTCACGACCGGAGCAGAAGTGAGGAGGAGGATGATCCAGTGGATGGGATGATCTCCAGGACAGGCTGTGCTGAGCTCCACTACGCTCTGCAGGACTGTATGGCTGAGCATCAGGACTGGAGGAAGTGTCAGACTGAGGTTCAGAAGTTTAAGGAGTGCATGACCACCTACCAGAACACTCGCAAAGAGCAGCTCCTGAAGCAAAGGACGTCAGCTACACAATCTGCCTGATGTAGACTCTGAGACTGTTGCACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU491807 lncRNA upstream 16420 17298202 ~ 17298668 (+) True G428316
TU491796 lncRNA upstream 28032 17286751 ~ 17287056 (+) True G428308
TU491795 lncRNA upstream 28645 17286230 ~ 17286443 (+) True G428307
TU491663 lncRNA upstream 180813 17126021 ~ 17134275 (+) True G428182
TU491638 lncRNA upstream 255937 17055028 ~ 17059151 (+) True CI01000304_17054994_17056008
TU492475 lncRNA downstream 23117 17338483 ~ 17338687 (+) True G428916
TU492521 lncRNA downstream 127568 17442934 ~ 17443324 (+) True G428954
TU492522 lncRNA downstream 128148 17443514 ~ 17443715 (+) True G428955
TU492527 lncRNA downstream 135597 17450963 ~ 17451287 (+) True G428960
TU492584 lncRNA downstream 181259 17496625 ~ 17496875 (+) True G429011
CI01000304_17290004_17290901.mRNA mRNA upstream 22854 17290004 ~ 17292234 (+) True CI01000304_17290004_17290901
CI01000304_17266905_17272656.mRNA mRNA upstream 42348 17266244 ~ 17272740 (+) True CI01000304_17266905_17272656
CI01000304_17210568_17214463.mRNA mRNA upstream 100450 17210568 ~ 17214638 (+) True CI01000304_17210568_17214463
CI01000304_17054994_17056008.mRNA mRNA upstream 258011 17054849 ~ 17057077 (+) False CI01000304_17054994_17056008
CI01000304_17009769_17023302.mRNA mRNA upstream 291498 17009769 ~ 17023590 (+) False CI01000304_17009769_17023302
CI01000304_17453343_17454323.mRNA mRNA downstream 137586 17452952 ~ 17454439 (+) True CI01000304_17453343_17454323
CI01000304_17470746_17471711.mRNA mRNA downstream 154986 17470352 ~ 17471840 (+) True CI01000304_17470746_17471711
CI01000304_17478774_17479733.mRNA mRNA downstream 162991 17478357 ~ 17480784 (+) True CI01000304_17478774_17479733
CI01000304_17495038_17496015.mRNA mRNA downstream 179285 17494651 ~ 17496208 (+) True CI01000304_17495038_17496015
CI01000304_17503794_17504102.mRNA mRNA downstream 187096 17502462 ~ 17504270 (+) True CI01000304_17503794_17504102
TU491628 other upstream 297894 17010730 ~ 17017194 (+) False CI01000304_17009769_17023302
TU491635 other upstream 553436 16755946 ~ 16761111 (+) True G428157
TU491561 other upstream 774043 16513714 ~ 16541045 (+) True G428096
TU491458 other upstream 1231374 16083230 ~ 16083714 (+) True G428017
TU491290 other upstream 1425497 15885454 ~ 15889591 (+) True G427860
TU492630 other downstream 366905 17682271 ~ 17684763 (+) True G429050
TU492542 other downstream 387944 17703310 ~ 17704096 (+) True CI01000304_17698564_17703891

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
tiger barb (Puntius tetrazona) TU114436 True 1347 TUCP 0.39 2 NC_056708.1 14010844 ~ 14012294 (+)