CI01000304_17453343_17454323 (OR106-11, OR106-12, OR106-2, OR106-1)


Basic Information

Item Value
gene id CI01000304_17453343_17454323
gene name OR106-11, OR106-12, OR106-2, OR106-1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 17452952 ~ 17454439 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_17453343_17454323.mRNA
ATATAAAAGGCGGTATTTCTGTCATATGTTTCTCTGGATAAGAAGAACATCTCAGATGGTTTATTATATGGCGTTTTAAAGTACTCTAAAAAAAAAACAGAAGTAAAGGACAAGACATTATTTTACATAATATCTTCTTTTTTTGTTGTTGTTCTTAAAAATGCAAGAAACTCTTTTTGTATTTTTGTTAAAACTATACTACAACTTTCAAAGTTTTCAACACCTGGCCGTCACAGACGCTGTCTGCATCTTTCTGCCTTTTTCCTTCATAGGAGCTTTTTTTCTGTGCATTTATGAGTACATTGAGGCTTTAATTGATTTCATTTTTTCATCTATACAAACTGCATTTTGAAATATTTGTGTCTGTATATTAGGAGTTGGGTGACTCAAAATGGCAAATGAAAATTACACTGTAAAAAATGTAGACAGCTTTATAATCACTGGATTTGATCACCTGCAGAACCAAAAGCTCCTCGGATTCCTCATCTTAATAACCTACATGCTCATATTTCTTGGAAACAGCATCAATCTGTGTATCATCTTGACTGACAGACATTTACACAAACCAATGTACATATTAATCTGTAATCTAGCTGTTGTTGACATAATGTTCTCCTCAACCTGCAGCACAACTATGATCTCAGTGCTGCTGGCTGAGATTAAAACTGTGTCATACTACTCTTGTATCTCAAGGACGTACTTCTATCATCTTGGTGATTTCACAGAGTGCATGGCTCTGACATTAATGGCAATTGACCGACTTATTGCAATTCGGCTTCCTTTAAGGTATCACAGCATTGTAACAAATTCACGAATCCTTCTGCTTATTTTTGTGACCTGGATCGCTGGTTTTGCTGTTATGGGTTTTGTGATATCAGTGGTAGACAATGTCCCATACTGTCAGCCTGTCATCAGATATGTGTTTTGTGAGTATGCTTCCATGATCAGAGCTGCTTGTGTCAATCCTGAACCCTATTTTTTCTTACCTGTAATGTTAAGTCTGTGGCCAATGTGTGGACAATTTCCATTTATTATGTGCACCTATGGTGTTCTGGCATATAGTGTGACTAAACTCTCCAACAACTCAAGCAGAAAGCAAATGATTAACACTTGTTTGAGTCACCTCATTGTCCTGCTCAGTTTTTATGCACCAAAGCTGGTGTCTAGCTTACTAACTCGAATAGGAGTTGTGCTAAATTTAACAGAGCGAAACGCAATTTTGATTGTAGCCTCTCTAGTTCCTCCCTTAATAAACCCCACTGTTTATTGCACCAGAACTAAAGAGATCAGGAAACGATTAGCAGATATATTCTTGCGCAAAAAAATAGTACCAAATCATTTAAAGTCAATATCAATAGCTTTATCATCTTAATTCTGATTGTGATGATGTTGCTGTTGCTTGTTTTGATCATGTGTTTTGTGATGCTGTTGCTCATGTTAGATACTATAAGCCAAAGCATAGACATGCTGATATTAAATTGTTTTCAA

Function

GO:

id name namespace
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_17453343_17454323.mRNA True 1488 mRNA 0.36 1 17452952 17454439

Neighbor

gene id symbol gene type direction distance location
CI01000304_17315088_17315342 NA coding upstream 137586 17315087 ~ 17315600 (+)
CI01000304_17290004_17290901 NA coding upstream 160718 17290004 ~ 17292234 (+)
CI01000304_17266905_17272656 SMYD4 coding upstream 180212 17266244 ~ 17272740 (+)
CI01000304_17210568_17214463 NA coding upstream 238314 17210568 ~ 17214638 (+)
CI01000304_17054994_17056008 NA coding upstream 395875 17054849 ~ 17059151 (+)
CI01000304_17470746_17471711 OR106-1 coding downstream 15913 17470352 ~ 17471840 (+)
CI01000304_17478774_17479733 OR106-11, OR106-12, OR106-2, OR106-3, OR106-1 coding downstream 23918 17478357 ~ 17480784 (+)
CI01000304_17495038_17496015 OR105-1 coding downstream 40212 17494651 ~ 17496208 (+)
CI01000304_17503794_17504102 NA coding downstream 48023 17502462 ~ 17504270 (+)
CI01000304_17509491_17510444 OR104-1 coding downstream 55052 17509491 ~ 17510444 (+)
G428960 NA non-coding upstream 1665 17450963 ~ 17451287 (+)
G428955 NA non-coding upstream 9237 17443514 ~ 17443715 (+)
G428954 NA non-coding upstream 9628 17442934 ~ 17443324 (+)
G428916 NA non-coding upstream 114265 17338483 ~ 17338687 (+)
G428316 NA non-coding upstream 154284 17298202 ~ 17298668 (+)
G429011 NA non-coding downstream 42186 17496625 ~ 17496875 (+)
CI01000304_17517199_17518206 OR104-1 non-coding downstream 62406 17516805 ~ 17518642 (+)
G429024 NA non-coding downstream 74850 17529289 ~ 17529938 (+)
G429036 NA non-coding downstream 109661 17564100 ~ 17564381 (+)
G429037 NA non-coding downstream 110108 17564547 ~ 17565200 (+)
CI01000304_17009769_17023302 ZDHHC20, ZDHHC20A other upstream 435758 17009769 ~ 17023882 (+)
CI01000304_16761621_16764983 EXOSC8 other upstream 691300 16761372 ~ 16765057 (+)
CI01000304_16505174_16506124 NA other upstream 911907 16504764 ~ 16513625 (+)
G428017 NA other upstream 1369238 16083230 ~ 16083714 (+)
G429050 NA other downstream 227832 17682271 ~ 17684763 (+)
CI01000304_17698564_17703891 NA other downstream 248871 17698467 ~ 17704096 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_002295 or106-12 coding NC_007121.7 CM002894.2 36265164 ~ 36267439 (+)