CI01000304_17517199_17518206 (OR104-1)


Basic Information

Item Value
gene id CI01000304_17517199_17518206
gene name OR104-1
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 17516805 ~ 17518642 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_17517199_17518206.mRNA
CTATAAAATAATAAAACCACAAGCATCTGCACTGATAACTGAGAAACGTATCACACTAAGCCAGGAATATTCTTAGCAGATGTCACATAACTTAACAGAGAAATAATCAAGGTAATCATGTGATCAGCTGAAATACAAACCAAAATAACATTTAGATTTTTGCAATTATTTAAAATCACAGAATGTGTAAGTAACTTAAGGAAAATTCATCTTAATTATTAACTAAATAATGTTCTATAACTAATGTATATTTTAATGTAGTTTTACAAAAAACAATTTATAAATTATTTATTTTATAATTTACACCAATTTATAAATCAAATCAAATCAAGGCCATGTTTATCAAGGTAATATCATGTGTAAAAGGCAGATACATTGATTCTTTTGTAAACAGATGTTCGCTGTATGTTTCAGTATGTTACAGGCAAACGAAACCGCAGCTTCTGTTGTAACCGAGTTTTTCATCGTGGGCTTCCCTGGACTCCTGCCCAAATACTACAGCCTGATAGCAGTGCTTTTGTTCTGCATCTACATTGCTGTAATCACCGGCAACTCTCTCATTGTGGTCCTTTTTGTGATTGAACGCAGCCTCCATAAGCCTATGTATATTATCATACTGAGTTTGTCTTTGTCTGATATTGGTTTTTGCACAGTTGCTCTGCCAAAAGTCATTTCTCGCTACTGGTTTAATGACGGTTATATTGCCTTCTACGTTTGTTTGTTTCAAAGGCAGCTGATTCACTATTTTGGGACCCTAAACTCTCTTATTATGATGATCATGGCTCTAGATCGGTACTTGGCGATCTGTTACCCACTAAGATACCCTGTTTTAATGACTAACCGCACTATGAGTCTTTTAATAGGGTTTTCCTGGGTTACTGCAATGATTTCACCAACCATCAGCTCAATGCAAACAGTGAAACTGCCATTCTGTGGGCCGAACATGATCGCTCATTGTTTCTGTGACTCTCAGTCTATGAACCAGCTCGCCTGTGCTGATGTCACCCTCCAGAGTCTCATTTCCTACGGTCTAGCGATGTTTGTGCTTCTCGTGCCATTCTCTTTCATCATCTTTTCCTATGCAAGTATCCTGGTGTCTGTGCTTCGAATAGCAAATGCACAGGGTCGTATGAAAGCCTTTTCTACCTGTGCCACACAGCTGACTATCATTATCATCTATTATGTGCCACGTTTCGTGGTTTACTCCAGTTCTAGCATCCCGAACACTCAGATCAACAGCAGTCAGAAGATCGCCCTGGTCATGTTCTACAGTCTGCTTCCACCACTAGTGAACCCCTTCATTTACTGCATCAGGATCAAAGAAATCAGACTGTTCTTTCTCAAGTGGTGTGTCCAGAGAAACAGGATGAGTCTAAAAGTTAATAGGTTAATTATTTCTTAATGAGATTATCCGCCTATCCCTGTTCTGATGTATCTCATTACATGCTCTTTACTGTATATGCATTTGTTAATATAGTTATTTTTTAATGCATTATATTATAGCCTACATATTTATCAAGCCATTTATCCAGTTCTTAATTTTAAAAAATTACATGGAATATTTGTAGTATCATTTGTCAAACTGCAGACATGTTTACCAACTGTAATATATTTTAATTATATTAAATATATTTTTTAATTAATTAAATAATTATATTAATTATTTTAATAAATAAATAATAAATTCCCACCAAACATACATTGAATATGACTGCAGTTTTTGTTTTTTATTCATAATGTTTCATTAGATTATTATTAATAATATGTTCTATTATTTTATACATCTAAGGTCTTGGTTACGAATGCTTTCACCTGTTTTTATTAGTATTTCTCATAAA
>TU492593
GAGAAACGTATCACACTAAGCCAGGAATATTCTTAGCAGATGTCACATAACTTAACAGAGAAATAATCAAGTATGTTACAGGCAAACGAAACCGCAGCTTCTGTTGTAACCGAGTTTTTCATCGTGGGCTTCCCTGGACTCCTGCCCAAATACTACAGCCTGATAGCAGTGCTTTTGTTCTGCATCTACATTGCTGTAATCACCGGCAACTCTCTCATTGTGGTCCTTTTTGTGATTGAACGCAGCCTCC

Function

NR:

description
putative odorant receptor

GO:

id name namespace
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K04257 OLFR; olfactory receptor

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_17517199_17518206.mRNA False 1838 mRNA 0.34 1 17516805 17518642
TU492593 True 250 lncRNA 0.44 2 17516845 17517397

Neighbor

gene id symbol gene type direction distance location
CI01000304_17509491_17510444 OR104-1 coding upstream 6361 17509491 ~ 17510444 (+)
CI01000304_17503794_17504102 NA coding upstream 12535 17502462 ~ 17504270 (+)
CI01000304_17495038_17496015 OR105-1 coding upstream 20597 17494651 ~ 17496208 (+)
CI01000304_17478774_17479733 OR106-11, OR106-12, OR106-2, OR106-3, OR106-1 coding upstream 36021 17478357 ~ 17480784 (+)
CI01000304_17470746_17471711 OR106-1 coding upstream 44965 17470352 ~ 17471840 (+)
CI01000304_17586057_17586464 NA coding downstream 67206 17585848 ~ 17586955 (+)
CI01000304_17590355_17601161 NA coding downstream 71479 17590121 ~ 17601350 (+)
CI01000304_17605385_17608254 ALOX5AP coding downstream 84847 17603489 ~ 17609235 (+)
CI01000304_17694317_17697897 UCP3 coding downstream 175551 17694193 ~ 17698238 (+)
CI01000304_17698564_17703891 NA coding downstream 179825 17698467 ~ 17704096 (+)
G429011 NA non-coding upstream 19930 17496625 ~ 17496875 (+)
G428960 NA non-coding upstream 65518 17450963 ~ 17451287 (+)
G428955 NA non-coding upstream 73090 17443514 ~ 17443715 (+)
G428954 NA non-coding upstream 73481 17442934 ~ 17443324 (+)
G428916 NA non-coding upstream 178118 17338483 ~ 17338687 (+)
G429024 NA non-coding downstream 10647 17529289 ~ 17529938 (+)
G429036 NA non-coding downstream 45458 17564100 ~ 17564381 (+)
G429037 NA non-coding downstream 45905 17564547 ~ 17565200 (+)
G428972 NA non-coding downstream 65366 17584008 ~ 17585490 (+)
G429051 NA non-coding downstream 161382 17680024 ~ 17680288 (+)
CI01000304_17315088_17315342 NA other upstream 201205 17315087 ~ 17315600 (+)
CI01000304_17009769_17023302 ZDHHC20, ZDHHC20A other upstream 499611 17009769 ~ 17023882 (+)
CI01000304_16761621_16764983 EXOSC8 other upstream 755153 16761372 ~ 16765057 (+)
CI01000304_16505174_16506124 NA other upstream 975760 16504764 ~ 16513625 (+)
G428017 NA other upstream 1433091 16083230 ~ 16083714 (+)
G429050 NA other downstream 163629 17682271 ~ 17684763 (+)

Expression


Co-expression Network