RNA id: CI01000304_17517199_17518206.mRNA


Basic Information

Item Value
RNA id CI01000304_17517199_17518206.mRNA
length 1838
RNA type mRNA
GC content 0.34
exon number 1
gene id CI01000304_17517199_17518206
representative False

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 17516805 ~ 17518642 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTATAAAATAATAAAACCACAAGCATCTGCACTGATAACTGAGAAACGTATCACACTAAGCCAGGAATATTCTTAGCAGATGTCACATAACTTAACAGAGAAATAATCAAGGTAATCATGTGATCAGCTGAAATACAAACCAAAATAACATTTAGATTTTTGCAATTATTTAAAATCACAGAATGTGTAAGTAACTTAAGGAAAATTCATCTTAATTATTAACTAAATAATGTTCTATAACTAATGTATATTTTAATGTAGTTTTACAAAAAACAATTTATAAATTATTTATTTTATAATTTACACCAATTTATAAATCAAATCAAATCAAGGCCATGTTTATCAAGGTAATATCATGTGTAAAAGGCAGATACATTGATTCTTTTGTAAACAGATGTTCGCTGTATGTTTCAGTATGTTACAGGCAAACGAAACCGCAGCTTCTGTTGTAACCGAGTTTTTCATCGTGGGCTTCCCTGGACTCCTGCCCAAATACTACAGCCTGATAGCAGTGCTTTTGTTCTGCATCTACATTGCTGTAATCACCGGCAACTCTCTCATTGTGGTCCTTTTTGTGATTGAACGCAGCCTCCATAAGCCTATGTATATTATCATACTGAGTTTGTCTTTGTCTGATATTGGTTTTTGCACAGTTGCTCTGCCAAAAGTCATTTCTCGCTACTGGTTTAATGACGGTTATATTGCCTTCTACGTTTGTTTGTTTCAAAGGCAGCTGATTCACTATTTTGGGACCCTAAACTCTCTTATTATGATGATCATGGCTCTAGATCGGTACTTGGCGATCTGTTACCCACTAAGATACCCTGTTTTAATGACTAACCGCACTATGAGTCTTTTAATAGGGTTTTCCTGGGTTACTGCAATGATTTCACCAACCATCAGCTCAATGCAAACAGTGAAACTGCCATTCTGTGGGCCGAACATGATCGCTCATTGTTTCTGTGACTCTCAGTCTATGAACCAGCTCGCCTGTGCTGATGTCACCCTCCAGAGTCTCATTTCCTACGGTCTAGCGATGTTTGTGCTTCTCGTGCCATTCTCTTTCATCATCTTTTCCTATGCAAGTATCCTGGTGTCTGTGCTTCGAATAGCAAATGCACAGGGTCGTATGAAAGCCTTTTCTACCTGTGCCACACAGCTGACTATCATTATCATCTATTATGTGCCACGTTTCGTGGTTTACTCCAGTTCTAGCATCCCGAACACTCAGATCAACAGCAGTCAGAAGATCGCCCTGGTCATGTTCTACAGTCTGCTTCCACCACTAGTGAACCCCTTCATTTACTGCATCAGGATCAAAGAAATCAGACTGTTCTTTCTCAAGTGGTGTGTCCAGAGAAACAGGATGAGTCTAAAAGTTAATAGGTTAATTATTTCTTAATGAGATTATCCGCCTATCCCTGTTCTGATGTATCTCATTACATGCTCTTTACTGTATATGCATTTGTTAATATAGTTATTTTTTAATGCATTATATTATAGCCTACATATTTATCAAGCCATTTATCCAGTTCTTAATTTTAAAAAATTACATGGAATATTTGTAGTATCATTTGTCAAACTGCAGACATGTTTACCAACTGTAATATATTTTAATTATATTAAATATATTTTTTAATTAATTAAATAATTATATTAATTATTTTAATAAATAAATAATAAATTCCCACCAAACATACATTGAATATGACTGCAGTTTTTGTTTTTTATTCATAATGTTTCATTAGATTATTATTAATAATATGTTCTATTATTTTATACATCTAAGGTCTTGGTTACGAATGCTTTCACCTGTTTTTATTAGTATTTCTCATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU492584 lncRNA upstream 19930 17496625 ~ 17496875 (+) True G429011
TU492527 lncRNA upstream 65518 17450963 ~ 17451287 (+) True G428960
TU492522 lncRNA upstream 73090 17443514 ~ 17443715 (+) True G428955
TU492521 lncRNA upstream 73481 17442934 ~ 17443324 (+) True G428954
TU492475 lncRNA upstream 178118 17338483 ~ 17338687 (+) True G428916
TU492597 lncRNA downstream 10647 17529289 ~ 17529697 (+) False G429024
TU492599 lncRNA downstream 10647 17529289 ~ 17529599 (+) False G429024
TU492600 lncRNA downstream 10647 17529289 ~ 17529938 (+) False G429024
TU492598 lncRNA downstream 10679 17529321 ~ 17529697 (+) False G429024
TU492601 lncRNA downstream 10679 17529321 ~ 17529599 (+) False G429024
CI01000304_17509491_17510444.mRNA mRNA upstream 6361 17509491 ~ 17510444 (+) True CI01000304_17509491_17510444
CI01000304_17503794_17504102.mRNA mRNA upstream 12535 17502462 ~ 17504270 (+) True CI01000304_17503794_17504102
CI01000304_17495038_17496015.mRNA mRNA upstream 20597 17494651 ~ 17496208 (+) True CI01000304_17495038_17496015
CI01000304_17478774_17479733.mRNA mRNA upstream 36021 17478357 ~ 17480784 (+) True CI01000304_17478774_17479733
CI01000304_17470746_17471711.mRNA mRNA upstream 44965 17470352 ~ 17471840 (+) True CI01000304_17470746_17471711
CI01000304_17586057_17586464.mRNA mRNA downstream 67206 17585848 ~ 17586955 (+) True CI01000304_17586057_17586464
CI01000304_17590355_17601161.mRNA mRNA downstream 71479 17590121 ~ 17601350 (+) True CI01000304_17590355_17601161
CI01000304_17605385_17608254.mRNA mRNA downstream 84847 17603489 ~ 17609235 (+) True CI01000304_17605385_17608254
CI01000304_17694317_17697897.mRNA mRNA downstream 175551 17694193 ~ 17698238 (+) True CI01000304_17694317_17697897
CI01000304_17698564_17703891.mRNA mRNA downstream 179825 17698467 ~ 17704035 (+) False CI01000304_17698564_17703891
TU491773 other upstream 201205 17314838 ~ 17314930 (+) True G428289
TU491628 other upstream 499611 17010730 ~ 17017194 (+) False CI01000304_17009769_17023302
TU491635 other upstream 755153 16755946 ~ 16761111 (+) True G428157
TU491561 other upstream 975760 16513714 ~ 16541045 (+) True G428096
TU491458 other upstream 1433091 16083230 ~ 16083714 (+) True G428017
TU492630 other downstream 163629 17682271 ~ 17684763 (+) True G429050
TU492542 other downstream 184668 17703310 ~ 17704096 (+) True CI01000304_17698564_17703891

Expression Profile