RNA id: TU492475


Basic Information

Item Value
RNA id TU492475
length 205
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G428916
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 17338483 ~ 17338687 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGCACACTAACGACATCTTGTGGTCAAAAGGTGGAAAAAACTGCCTTTGCGTCCCAGACGACCCAGCTCTTTTTGGACTGTTTCATGTAATAAATCAGTTTGTGCTATGAAAAGCGTATAAAACAATGTAAATTATTATTATACATAAAAAAAGTCTTTCACGTGTCATTTTACTTACACAATTTGAATAAATGAGTCTGAATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU491807 lncRNA upstream 39815 17298202 ~ 17298668 (+) True G428316
TU491796 lncRNA upstream 51427 17286751 ~ 17287056 (+) True G428308
TU491795 lncRNA upstream 52040 17286230 ~ 17286443 (+) True G428307
TU491663 lncRNA upstream 204208 17126021 ~ 17134275 (+) True G428182
TU491638 lncRNA upstream 279332 17055028 ~ 17059151 (+) True CI01000304_17054994_17056008
TU492521 lncRNA downstream 104247 17442934 ~ 17443324 (+) True G428954
TU492522 lncRNA downstream 104827 17443514 ~ 17443715 (+) True G428955
TU492527 lncRNA downstream 112276 17450963 ~ 17451287 (+) True G428960
TU492584 lncRNA downstream 157938 17496625 ~ 17496875 (+) True G429011
TU492593 lncRNA downstream 178158 17516845 ~ 17517397 (+) True CI01000304_17517199_17518206
CI01000304_17315088_17315342.mRNA mRNA upstream 23117 17315088 ~ 17315366 (+) False CI01000304_17315088_17315342
CI01000304_17290004_17290901.mRNA mRNA upstream 46249 17290004 ~ 17292234 (+) True CI01000304_17290004_17290901
CI01000304_17266905_17272656.mRNA mRNA upstream 65743 17266244 ~ 17272740 (+) True CI01000304_17266905_17272656
CI01000304_17210568_17214463.mRNA mRNA upstream 123845 17210568 ~ 17214638 (+) True CI01000304_17210568_17214463
CI01000304_17054994_17056008.mRNA mRNA upstream 281406 17054849 ~ 17057077 (+) False CI01000304_17054994_17056008
CI01000304_17453343_17454323.mRNA mRNA downstream 114265 17452952 ~ 17454439 (+) True CI01000304_17453343_17454323
CI01000304_17470746_17471711.mRNA mRNA downstream 131665 17470352 ~ 17471840 (+) True CI01000304_17470746_17471711
CI01000304_17478774_17479733.mRNA mRNA downstream 139670 17478357 ~ 17480784 (+) True CI01000304_17478774_17479733
CI01000304_17495038_17496015.mRNA mRNA downstream 155964 17494651 ~ 17496208 (+) True CI01000304_17495038_17496015
CI01000304_17503794_17504102.mRNA mRNA downstream 163775 17502462 ~ 17504270 (+) True CI01000304_17503794_17504102
TU491773 other upstream 22883 17314838 ~ 17314930 (+) True G428289
TU491628 other upstream 321289 17010730 ~ 17017194 (+) False CI01000304_17009769_17023302
TU491635 other upstream 576831 16755946 ~ 16761111 (+) True G428157
TU491561 other upstream 797438 16513714 ~ 16541045 (+) True G428096
TU491458 other upstream 1254769 16083230 ~ 16083714 (+) True G428017
TU492630 other downstream 343584 17682271 ~ 17684763 (+) True G429050
TU492542 other downstream 364623 17703310 ~ 17704096 (+) True CI01000304_17698564_17703891

Expression Profile