RNA id: CI01000304_17470746_17471711.mRNA



Basic Information


Item Value
RNA id CI01000304_17470746_17471711.mRNA
length 1489
RNA type mRNA
GC content 0.35
exon number 1
gene id CI01000304_17470746_17471711
representative True

Chromosome Information


Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 17470352 ~ 17471840 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AAATAAAAGGCAGGACATCACACATCTGCTGAAATGGATGACAGCAACATCTCAGAAGCTCTTGCATAAGAAATTATAATATTTTAAGAATCTAAAAAGGAATTCCTAAAGAAGAATAAGACTAGAAAATGTTTTACATATTATTCATATTTACAATTTAAAATGATCAAAACTCTTTTTGTATTTCTTTTGAAACTATACTTCAACTTTCACAGTTTTTATCACTTTGCTGTTATAGACGCTTTCTGCATCTTTCTGCCATTTTCCGTCACAGGAGCTGTTTTTATGTGCATATATGAGTACATCAAGTATCTAATTGTTTTTTTTTTTTATTTTATAGCTGTATTTTTTTTTAAATATTTGTGTCTGTGTGATAGGAGTTCAGTGACTGAAAATGGTGACTGAAAATTACACTGTGAACAATGTAGACAGCTTTATAATCACTGGATTTGATCACCTGCAGAACCAAAAGCTCCTCGGATTCCTCATCTTAATAACCTACATGCTCATATTGCTTGGGAATGGCATCAATCTGTGTATCATCTTGACTGACAGACATTTACACAAACCAATGTACATTTTAATCTGTAATCTAGCTGTTGTTGACATAATGTTCTCCTCAACCTGCAGCACAACTATGATCTCAGTGCTGCTGGCTGAGATTAAAACTGTGTCGTACTACTCTTGTATCTCAAGGACGTTCTTCTATCATCTTGGTGGTATCAAAGCATGCCTGGCTCTGTCCTTAATGGCAATAGACCGACTTATTGCGATTAGGCTACCATTAAGATACCACAGCATTGTAACAAATTCAAGAACATTTCTGTTTATTTTATTGACCTGGCTCATTGGTTTTACTTTAATGGCTGTTATGATATCTGTGGTAGACAGTGCTCCATACTGTCAGCCTGTTATCAGATATGTGTTCTGTGATTATCCATCCATGATCAGAGCTGCTTGTGTCAATCCTGAACCATATTTTTTATTTCCTGCAATGATTAATCTGTGGTTGTTGTGTGGACAATTTCCCTTTATTATGTGCACTTATGCTGTTCTGGCATATAGTGTGTCTAAACTCTCCAACAACTCAAACAGAAAGCAAATGATCAGCACCTGCTCCAGTCACCTCATTGTCTTGTTTAGTTATTTTGCACCAAAGCTGGTCTCAAATTTACTAACTCGAATAGGTGTTGTGCTAAATTTAACAGAGAGGAACGCAGTAATGATTGTAGCCTCTCTTGTTCCTTCCTTAATAAACCCCACTGTTTATTGCACCAGAACTAAAGAGATCAGGAAACGATTATCAGATATTTTTTTGCGCAAAAGAATTGTACCAAATCACTTACAGGTTTTATCATAATATTATTATACAATTATTCATTATTGTGTTAATTATCATGAATGAGAGTGAAAATGTTGGTGATGCATGTTTTTTCACATTAGAGACAAGACATACAGTAGGTATGTTGCTATCTTGTCTGTAGTCAAA

Function


GO:

id name namespace
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU492527 lncRNA upstream 19065 17450963 ~ 17451287 (+) True G428960
TU492522 lncRNA upstream 26637 17443514 ~ 17443715 (+) True G428955
TU492521 lncRNA upstream 27028 17442934 ~ 17443324 (+) True G428954
TU492475 lncRNA upstream 131665 17338483 ~ 17338687 (+) True G428916
TU491807 lncRNA upstream 171684 17298202 ~ 17298668 (+) True G428316
TU492584 lncRNA downstream 24785 17496625 ~ 17496875 (+) True G429011
TU492593 lncRNA downstream 45005 17516845 ~ 17517397 (+) True CI01000304_17517199_17518206
TU492597 lncRNA downstream 57449 17529289 ~ 17529697 (+) False G429024
TU492599 lncRNA downstream 57449 17529289 ~ 17529599 (+) False G429024
TU492600 lncRNA downstream 57449 17529289 ~ 17529938 (+) False G429024
CI01000304_17453343_17454323.mRNA mRNA upstream 15913 17452952 ~ 17454439 (+) True CI01000304_17453343_17454323
CI01000304_17315088_17315342.mRNA mRNA upstream 154986 17315088 ~ 17315366 (+) False CI01000304_17315088_17315342
CI01000304_17290004_17290901.mRNA mRNA upstream 178118 17290004 ~ 17292234 (+) True CI01000304_17290004_17290901
CI01000304_17266905_17272656.mRNA mRNA upstream 197612 17266244 ~ 17272740 (+) True CI01000304_17266905_17272656
CI01000304_17210568_17214463.mRNA mRNA upstream 255714 17210568 ~ 17214638 (+) True CI01000304_17210568_17214463
CI01000304_17478774_17479733.mRNA mRNA downstream 6517 17478357 ~ 17480784 (+) True CI01000304_17478774_17479733
CI01000304_17495038_17496015.mRNA mRNA downstream 22811 17494651 ~ 17496208 (+) True CI01000304_17495038_17496015
CI01000304_17503794_17504102.mRNA mRNA downstream 30622 17502462 ~ 17504270 (+) True CI01000304_17503794_17504102
CI01000304_17509491_17510444.mRNA mRNA downstream 37651 17509491 ~ 17510444 (+) True CI01000304_17509491_17510444
CI01000304_17517199_17518206.mRNA mRNA downstream 44965 17516805 ~ 17518642 (+) False CI01000304_17517199_17518206
TU491773 other upstream 154752 17314838 ~ 17314930 (+) True G428289
TU491628 other upstream 453158 17010730 ~ 17017194 (+) False CI01000304_17009769_17023302
TU491635 other upstream 708700 16755946 ~ 16761111 (+) True G428157
TU491561 other upstream 929307 16513714 ~ 16541045 (+) True G428096
TU491458 other upstream 1386638 16083230 ~ 16083714 (+) True G428017
TU492630 other downstream 210431 17682271 ~ 17684763 (+) True G429050
TU492542 other downstream 231470 17703310 ~ 17704096 (+) True CI01000304_17698564_17703891

Expression Profile