RNA id: TU491635


Basic Information

Item Value
RNA id TU491635
length 1163
RNA type TUCP
GC content 0.44
exon number 9
gene id G428157
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 16755946 ~ 16761111 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCCAAGAACCATCTGCCACTTTTCAAAACCAAAACCTAATATAGTATGTAAAAGAAAACCATGAAAAACAGAGATATTACATTAAAAAATAAAAAGACAAGGACAATCCCCTTGTGTGGACACGGCACGGTCAGTGATAATGAAATGCTAGTGCTGTTCATGATTGCGTACAGAGTGCGCTCATTTGTGGCAAAGGGCTGTACGTTTAACCGTTGGCCCATGTTAGCTCATGAACAGCGCACTAGCAGTAACAGCAGCTACTGAGTTTTTCTCTCCGACTCCAGCCTCCAGGCACCAGTGAGGTAACGCAGTCTGATAAAGACTAGATCCCGGCCCATCTGCAGCCAACTCCAGAATGGCACCAACTTTGACCCTTCAATCTCTGTCCAGTTAACAGCCACTTCTGCTACAGGGATTTCAAAACACTGAGCAATGTAGAGAAGTTCCACATCAAATGCCCAGCGTTCCACATGCAGGCTGGAGAAGGTTTTCAAGGCAGCCTCACGAGTGAAGAGCTTAAATCCACATTGTGTGTCTTTAATCCCCCTCACGCAAAAGAACCACACCAAGAAGTGGAATCCATACATCAGAAACGTTCGGAACACAGACCGCTGAGCCACTGATTCTTCTTCCAGGTGCGCTCTGGATCCACAGGAGATCGCCATGTTATCAGGCTTCTCACTGATGCTCTGAAGACCATCTTCCACCTTTTCAATGTCAGCAAATTTAGTGGCTCCATCTGCATCAGCCATAAGAACAAGCCGTCCACGACAGCTTAGTGCTCCCATTCTAACTGCACCACCTTTTCCACGGTTCTTCACCAATGTCAGAACTCTCACTTTTTTTGCTCCATACTTCTTTGTGTATTTCATGGCAACCTCTGTAGTTTTGTCTTTGCTGCCATCATCTACTACAATAACTTCATATGTGAATGATGGATTCTCCTTCTGTCTTTTCTCCAGGTATTCCATGGCTTCATCCATCATAACAGGCAATCTGAGTTCTTCATTGTATGAAGGGACAATCACAGACAGATCCAATGAGGGAGGGTCCATCAGACTGGGAAAAGACTCTTTCTTGCCATCTGCAGTCAAAAAGTGTTTCTCCTTCTCATGGCGAGTCTGATCTACCATCTTAGCACTGACATGAGCAATCACAACAACCAAAAGTAAGACGATCAGCGCCAGGATCATCGAACACTGCAATAATTCACATAAACAGAAATCCATCATCCATTTGTCAGTCAACATAGCACTGCAGAGAAGTTGTCACCAGTTTACAGCTAAACTACCCTACTATATCATACAGAGCAGTTTTAAAATGAGCCTCCGTGAGGCGGGACATATATGAATGGGTGTCGTACTTATTTACGGAATAAATAGTTAAATCTCCATTGTCGAATTTACTTCCAGTCACACAGAAACACCTACGCGGAAGTCGTCCT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU491669 lncRNA upstream 24118 16731607 ~ 16731828 (+) True G428188
TU491583 lncRNA upstream 101007 16649892 ~ 16654939 (+) True G428116
TU491564 lncRNA upstream 200324 16475222 ~ 16555622 (+) True G428099
TU491522 lncRNA upstream 332997 16422747 ~ 16422949 (+) True G428069
TU491296 lncRNA upstream 535538 16220030 ~ 16220408 (+) True G427866
TU491678 lncRNA downstream 17711 16779363 ~ 16780995 (+) True G428197
TU491682 lncRNA downstream 30641 16792293 ~ 16792623 (+) True G428201
TU491713 lncRNA downstream 91898 16853550 ~ 16853767 (+) True G428232
TU491629 lncRNA downstream 259230 17021541 ~ 17021924 (+) True G428151
TU491631 lncRNA downstream 262405 17024057 ~ 17025288 (+) True G428153
CI01000304_16743239_16743811.mRNA mRNA upstream 12135 16742503 ~ 16743811 (+) True CI01000304_16743239_16743811
CI01000304_16740135_16740524.mRNA mRNA upstream 14951 16738846 ~ 16740995 (+) True CI01000304_16740135_16740524
CI01000304_16565077_16641637.mRNA mRNA upstream 113605 16565077 ~ 16642341 (+) True CI01000304_16565077_16641637
CI01000304_16505174_16506124.mRNA mRNA upstream 249812 16504764 ~ 16506134 (+) False CI01000304_16505174_16506124
CI01000304_16470293_16490666.mRNA mRNA upstream 263905 16470253 ~ 16492041 (+) True CI01000304_16470293_16490666
CI01000304_16830439_16835774.mRNA mRNA downstream 68787 16830439 ~ 16836287 (+) True CI01000304_16830439_16835774
CI01000304_16878271_16882011.mRNA mRNA downstream 116619 16878271 ~ 16882011 (+) True CI01000304_16878271_16882011
CI01000304_16881934_16886577.mRNA mRNA downstream 120282 16881934 ~ 16887522 (+) True CI01000304_16881934_16886577
CI01000304_16889868_16901389.mRNA mRNA downstream 128216 16889868 ~ 16902126 (+) True CI01000304_16889868_16901389
CI01000304_16914506_16925875.mRNA mRNA downstream 152854 16914506 ~ 16926126 (+) True CI01000304_16914506_16925875
TU491561 other upstream 214901 16513714 ~ 16541045 (+) True G428096
TU491458 other upstream 672232 16083230 ~ 16083714 (+) True G428017
TU491290 other upstream 866355 15885454 ~ 15889591 (+) True G427860
TU490061 other upstream 1805354 14948890 ~ 14950592 (+) True G426828
TU489538 other upstream 2425060 14330048 ~ 14330886 (+) True G426312
TU491628 other downstream 249078 17010730 ~ 17017194 (+) False CI01000304_17009769_17023302
TU491773 other downstream 553186 17314838 ~ 17314930 (+) True G428289
TU492630 other downstream 920619 17682271 ~ 17684763 (+) True G429050
TU492542 other downstream 941658 17703310 ~ 17704096 (+) True CI01000304_17698564_17703891

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00005380 False 1508 mRNA 0.46 10 NC_007121.7 34984617 ~ 35002731 (-)