RNA id: TU491583


Basic Information

Item Value
RNA id TU491583
length 2339
lncRNA type antisense_over
GC content 0.45
exon number 7
gene id G428116
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 16649892 ~ 16654939 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AATGTAAGAGCCACTCTGTATTCCATGCACTAATGAGAGAATACAATGACACCGTAAGCAGGGCTATGAGTTACTAGAACACCTCTTACTGCACTTCAGGAACACTCAACCCTAATCTAACCTCCTGACACCAACAGCAGCGCTTCTCATTACACAGCACTACCAATGAATGAATGTCCTGCATTAATGAAATGGAATTAATCAGAACGAACCGTTGGCATTTGTATTTCCAAGAGCTGACCCTGTATTAAGGAATGTTGCTTATGTCTTTCCCTCAATGCATTTGTGCTTATGTTCCATATACTTAAAAACTGCAAAAATGGTTAAATGTGACTTACATTGTCTAGATAAGATAAAGAAATATATTGTCAATATCAAAATAATTGAAATTATATTATTTACACTGATTACAAAACAAGGTCCCCATCTCACGTATGAACAAGTGCTGTGCGTCCAGTACTGTGACCACAAAGGGAAGGAAATCCAGATACAAGTTTATCTCTTAAGAGGTATCGGCAATGCAAACCATTTTCAGTCTGCTTAGAGAGGTTTTTGGGAACACGGAATACTAATTACCAAGAATGACATTAGCTAATCAGTTATAGTGTCCTTACAGATTCCTTCTGGAGCATATGAACAATACCGGACCAATAAAAACATCAAATTTCTAAGGTGCTTCAACAGAAAAAGAGGATATTTTTGAAGTTGAATAAAAAAAGAAAATGTATTCTTTATGTATAAATAGATGAAAAAGTTATTATAATGACCATAAATAAACAAGAAACCCCCTTCTTGACGGTCATCGTTTACCCTGCACCTTTATGTGATCAGATTACAAAATGGTTCGGTTCAGTTCATCAGTCCACTCGGCCGCGTTCCGAATCCTCATAAACCCTTCTCCTCTTTTAGTGCCCTTTCCACTCGCTCTCTTTCCTTTCAATGCTAGAAAGGGGAGAAGAGGGAGCGAACAGTCTCCGTGGAGCAGGCGGAAAAGTCTTCAGACTCGGGCGTGGTGGTGGTGGTGGCGGTGGTGGTAGAGGGACATGGACTGGATAATAGGGCTGGAGCAGGAAGTCCAGTGGGCGGCTGGGACGTGGGGTCGAGGTGCAGACCGGGGCACAGACGGGGCGTAAAGGCTGGAATGTGGAGGCTACAGGTCGGCTGGGTGGTCCAGGGAGCTGCGCTCACATTCTGGTGGCGTCCTCGTCGGAAAATCTGCCTCTCCTTATCAAGAGCGGTGGTCTTATCCAAAACATGCCCGGGTTCTGATAGAAATCCAACGACCCTGATCTCTGGATGGAAAAGTCATGGTCGAGCGTCATGACAGACACTCCTGGGGTGTTGTTGCTGGGTTTGGGCCCGGTGTTAAAGTGCTTCTTGATCTTTCCTGCCACTGACAGCTGGTGCTCGTTTTCTGACAGACCGTCATTAGTGACCCAGGGATGTTCCAGCACCTGCAGCGCTGTGTATCTCTGATCCACTTCCACCTGCAGCATAGACACGATCAGCTCTTTGGCTGAGTCGGATACATTGTCCCAGTACGGGGGAGGGAATTCTAACTGTCCCAGCAGTATCTGGTCAAACAGAGCTTCTTGATCATCAGTGCTCCCACGAAATGGAGGAAAGCCACAGAGGAGAATATATGTGATGACTCCAGCGGCCCAGATATCTACCTTAAGGCCATACCCGGTCTCTGCGATAATCTCTGGTGCTACATATGTGGGTGTTCCACAGACAGTGTACAGGGGTCCGTCTACCACGGTGGCCAAGCCAAAGTCGCCCAGCTTCAGCGATTTGCTTCCGTCTTGGTGCTCGTAGACCTGTGAATAAAAGCAAAGAGCGATATTAGATCTGGGAGCAAAATCAACCTAGATCCTTCAAAGCAATCTTTGAAAATGACATATCCGGCTCTCAAAAATCCCAAGGTGAGCATATGTGCAGATCAGTGTCAAAAATATGCACTCGCTTCAAATAAACAGATATTTGTGCATTTAATGTCTTTAACCTAAATCCCACTGATGCTAAAAAGGAACCGAATCCATTGAGCATCCTAAGCTTGGCTGGCTTTGTGTTTGCTGTTATATAATATGTAAAGTGGTGCGTTATGAAAAAACCTCATTCTGCATTTGACATGCATGCTTCCAGCCACAAGCGATTATCTTCGACACACCGAGAGTGAGCGAGTGCATATGTGAGCCAGTGCACGGCTCTTTCTAGCTCACTGGAGTGCAGTTGAGAAACAGAGTCTTACTTACTGCTACCAGAACACATTTTCAATTGTAAGTTCCACAGCTTTAACAGACAAATTCCCCAGCTCATAAACAGGGCTTAAAGGGATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU491564 lncRNA upstream 94270 16475222 ~ 16555622 (+) True G428099
TU491522 lncRNA upstream 226943 16422747 ~ 16422949 (+) True G428069
TU491296 lncRNA upstream 429484 16220030 ~ 16220408 (+) True G427866
TU491298 lncRNA upstream 429955 16218447 ~ 16219937 (+) True G427868
TU491468 lncRNA upstream 519812 16129707 ~ 16130080 (+) True G428027
TU491669 lncRNA downstream 76668 16731607 ~ 16731828 (+) True G428188
TU491678 lncRNA downstream 124424 16779363 ~ 16780995 (+) True G428197
TU491682 lncRNA downstream 137354 16792293 ~ 16792623 (+) True G428201
TU491713 lncRNA downstream 198611 16853550 ~ 16853767 (+) True G428232
TU491629 lncRNA downstream 365943 17021541 ~ 17021924 (+) True G428151
CI01000304_16565077_16641637.mRNA mRNA upstream 7551 16565077 ~ 16642341 (+) True CI01000304_16565077_16641637
CI01000304_16505174_16506124.mRNA mRNA upstream 143758 16504764 ~ 16506134 (+) False CI01000304_16505174_16506124
CI01000304_16470293_16490666.mRNA mRNA upstream 157851 16470253 ~ 16492041 (+) True CI01000304_16470293_16490666
CI01000304_16458657_16462430.mRNA mRNA upstream 186869 16458520 ~ 16463023 (+) True CI01000304_16458657_16462430
CI01000304_16433456_16438415.mRNA mRNA upstream 211361 16432429 ~ 16438531 (+) True CI01000304_16433456_16438415
CI01000304_16740135_16740524.mRNA mRNA downstream 83907 16738846 ~ 16740995 (+) True CI01000304_16740135_16740524
CI01000304_16743239_16743811.mRNA mRNA downstream 87564 16742503 ~ 16743811 (+) True CI01000304_16743239_16743811
CI01000304_16761621_16764983.mRNA mRNA downstream 106682 16761621 ~ 16765057 (+) False CI01000304_16761621_16764983
CI01000304_16830439_16835774.mRNA mRNA downstream 175500 16830439 ~ 16836287 (+) True CI01000304_16830439_16835774
CI01000304_16878271_16882011.mRNA mRNA downstream 223332 16878271 ~ 16882011 (+) True CI01000304_16878271_16882011
TU491561 other upstream 108847 16513714 ~ 16541045 (+) True G428096
TU491458 other upstream 566178 16083230 ~ 16083714 (+) True G428017
TU491290 other upstream 760301 15885454 ~ 15889591 (+) True G427860
TU490061 other upstream 1699300 14948890 ~ 14950592 (+) True G426828
TU489538 other upstream 2319006 14330048 ~ 14330886 (+) True G426312
TU491635 other downstream 101007 16755946 ~ 16761111 (+) True G428157
TU491628 other downstream 355791 17010730 ~ 17017194 (+) False CI01000304_17009769_17023302
TU491773 other downstream 659899 17314838 ~ 17314930 (+) True G428289
TU492630 other downstream 1027332 17682271 ~ 17684763 (+) True G429050
TU492542 other downstream 1048371 17703310 ~ 17704096 (+) True CI01000304_17698564_17703891

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU14046 True 110 lncRNA 0.39 1 CI01000001 437528 ~ 437637 (+)
bowfin (Amia calva) TU14046 True 5622 lncRNA 0.38 1 CM030122.1 8326182 ~ 8331803 (-)