RNA id: CI01000304_16433456_16438415.mRNA



Basic Information


Item Value
RNA id CI01000304_16433456_16438415.mRNA
length 1554
RNA type mRNA
GC content 0.44
exon number 5
gene id CI01000304_16433456_16438415
representative True

Chromosome Information


Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 16432429 ~ 16438531 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CTTTAAAAAGCGTCAGAGATCATACATACGGCCTGACTTCACCCCTTGTGATCCCGTGTGACATTTCTTAACCTTGTGACTCTAGTCCCAGGCTGAGTTGGACTAGTCTCCTGTCTAGTGTGAGAACTCACAGGAGGGAAATAAGGTGAATGTGCTAATTCTAATAATTACGTTTACACCAAATGCAACTGAATAATTTCTCTAGTTTCATTTCCTCGCTTCATGGCCTCGCCTTAGGATCAGGTGGAATCAGGTTTGTGATGAGGAGACAGATGTTGAGATCGTGTGGTGTCGATGTTGTCCAACACATCTGGGGATTAAGGGCGGATGAAGTACATTTCAGAAAACAATGACCAATGTGATTGTCCTCAGATTGCTACAGCCCTCACGGTCGATTAAAACCCCATCTGCAGAGTGGCGACCTGTCAGTTAATATAGGACATCAGCACCTCAGAACCTCTTTCTCCCTCCATTTTATTGATTTCTTTATCTTGTCAGAATGAACAATGTCAGTAAGAGAGTGTGAAAAGCAGTTTTATTTTTTTAAAGGGGGTTATTATTTTAAATATCTTTCAAATGAAGAAGAAATAACTCTGTGCACAAAGGATTAGGGTTACAAATGGTGAAACCAAACCCATGCATGCCTCATTTACAGACCCAGTTGAGTAATATCTGTTAATTCCAGGCTCTGTGAGGGGTTGTGTGTGAAATTTGGGGTAGCGGTAAAGCTACAGCAGGGGACATCCATTGCCTGGAACTCAACGAATTTTGAGTCAGGCAGAGGTCGCAAAAATGGCCCCACTTTCCCTTAATACCATTTACCCTTACCATCACTCTCAACAAACAGCAAACATGGAAACATTATGCTCTTGAACAAAACCGTGAAACATTATGCTCTTAAAATCTAGTCAGATGTTTTGTTTGTAATCACAGTTGGGTCTCTTTAACATCTCAGTTCTTTCTCCTAGAAAGGAAATAGAGAGAAAATGAGATGTTACAGTAAACCTTTATGATTTAAAACCAGCAAATGACTGTGTTGTTTGTGTACTTAACATCTAAAATGGTGAGCGAGCCGCAGAGGGCCAAACGCATCCAGCCTTGCACACCGTCCAGCCATCTGCAGGCAAAACAGATAACGGGTCTGTCCTCCCCCAACCCCTGGGTCGAGAAAATAGCCGTTTGCGACCAGGTCACGGTGGGGGTGACAATGAATTCAAACTTACCAGGAGGTTTTGGCACTGTTGTGATTGACAGTGTCAGGCGTCAGACTGCACAGACATTAGCTCAAGTGAAAGGTCATTCCGCACCAGATCCTCTCTGTCCCATGTCTCAGAAACCAGCAGAGGTAGAGAACATGTTCTCCACTCCCTCCTCTGAGTTAAATTTAGCTCTTGCCTGCTGTAGTGTGGAGCAGATGCACATGAGGGAGAGATATTGAAGTGTTGTAAAGACAAGAGAGAGCGTTTGTTCTGCTCCTGGTGTTATTAGGTTGATGGTTACTGGACGTCAGGTGCTCTGACTGGTCTGTGCTGGTCCTGCATTGATCATGCCACA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU491522 lncRNA upstream 9480 16422747 ~ 16422949 (+) True G428069
TU491296 lncRNA upstream 212021 16220030 ~ 16220408 (+) True G427866
TU491298 lncRNA upstream 212492 16218447 ~ 16219937 (+) True G427868
TU491468 lncRNA upstream 302349 16129707 ~ 16130080 (+) True G428027
TU491294 lncRNA upstream 334936 16091400 ~ 16097493 (+) True G427864
TU491564 lncRNA downstream 36691 16475222 ~ 16555622 (+) True G428099
TU491583 lncRNA downstream 211361 16649892 ~ 16654939 (+) True G428116
TU491669 lncRNA downstream 293076 16731607 ~ 16731828 (+) True G428188
TU491678 lncRNA downstream 340832 16779363 ~ 16780995 (+) True G428197
TU491682 lncRNA downstream 353762 16792293 ~ 16792623 (+) True G428201
CI01000304_16406577_16413911.mRNA mRNA upstream 18206 16406067 ~ 16414223 (+) True CI01000304_16406577_16413911
CI01000304_16370076_16401491.mRNA mRNA upstream 30815 16369970 ~ 16401614 (+) True CI01000304_16370076_16401491
CI01000304_16358266_16367985.mRNA mRNA upstream 64089 16358266 ~ 16368340 (+) True CI01000304_16358266_16367985
CI01000304_16347460_16350144.mRNA mRNA upstream 82244 16346776 ~ 16350185 (+) True CI01000304_16347460_16350144
CI01000304_16315830_16336387.mRNA mRNA upstream 95501 16315168 ~ 16336928 (+) True CI01000304_16315830_16336387
CI01000304_16458657_16462430.mRNA mRNA downstream 19989 16458520 ~ 16463023 (+) True CI01000304_16458657_16462430
CI01000304_16470293_16490666.mRNA mRNA downstream 31722 16470253 ~ 16492041 (+) True CI01000304_16470293_16490666
CI01000304_16505174_16506124.mRNA mRNA downstream 66233 16504764 ~ 16506134 (+) False CI01000304_16505174_16506124
CI01000304_16565077_16641637.mRNA mRNA downstream 126546 16565077 ~ 16642341 (+) True CI01000304_16565077_16641637
CI01000304_16740135_16740524.mRNA mRNA downstream 300315 16738846 ~ 16740995 (+) True CI01000304_16740135_16740524
TU491458 other upstream 348715 16083230 ~ 16083714 (+) True G428017
TU491290 other upstream 542838 15885454 ~ 15889591 (+) True G427860
TU490061 other upstream 1481837 14948890 ~ 14950592 (+) True G426828
TU489538 other upstream 2101543 14330048 ~ 14330886 (+) True G426312
TU489575 other upstream 2853582 13556451 ~ 13573943 (+) True G426349
TU491561 other downstream 66331 16513714 ~ 16541045 (+) True G428096
TU491635 other downstream 317415 16755946 ~ 16761111 (+) True G428157
TU491628 other downstream 572199 17010730 ~ 17017194 (+) False CI01000304_17009769_17023302
TU491773 other downstream 876307 17314838 ~ 17314930 (+) True G428289
TU492630 other downstream 1243740 17682271 ~ 17684763 (+) True G429050

Expression Profile