RNA id: CI01000304_16370076_16401491.mRNA


Basic Information

Item Value
RNA id CI01000304_16370076_16401491.mRNA
length 8329
RNA type mRNA
GC content 0.51
exon number 52
gene id CI01000304_16370076_16401491
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 16369970 ~ 16401614 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTATAAAAACTGCACATATTTGGTGATCATAATTTATAAGATGTATCACAGGAACATAACAGGAAATTACAACAAAGTGTTCTTCTTTCAGAACAAAGACCACAAAATGGCCCGGGTGGCACTTGAATCTCTCTATCGGCTGCTGTGGGTCTACATGATCCGAATCAAATGTGAAAGCAACACTGCAACACAAAGCCGCCTCACCTCAATCATATCAACACTGTTCCCTAAGGGTTCACGGAGTGTTGTTCCCAGAGACATGCCACTCAATATCTTTGTCAAGATAATTCAGTTCATTGCCCAGGAAAGACTGGATTTTGCTATGAAAGAAATAATATGTGATCTGCTGAGTGTTGGAAAATCAGCCAAAGCTTTCAGTTTAAACCCAGAGAGAATGAACATCGCTCTGAGAGCGTTCCTCGTCATAGCCGATAACCTGCAGCAGAAAGATGGTGAACCACCCATGCCAAACACAGGGGCTACTTTGCCTTCTGGGAACACACTGAAGAAGAAAAAAACCTACCTCAGCAAAACTCTAACTGAGGAGGAAGCAAAACTTATAGGTATGGCACTGTATTACTCCCAGGTCAGGAAAGCCATTGATAACATCCTGAGGCACTTGGATAAGGAGGTGGGCCGCTGCATGATGCTCACCAATGCCCAGATGCTCAACAAGGAACCTGAAGACATGATCACGGGTGAGAGAAAACCGAAGATTGACTTGTTCCGGACGTGTGTTGCGGCCATTCCCCGTATCCTGCCAGATGGCCTGTCAAAAATTGAGCTCATCGATCTCTTGGCCAGGCTAACGGTCCACATGGATGATGAACTCAGACTCATTGCCCAGAATTCACTGCAGAGTCTGCTGCTGGACTTCTCCGATTGGCGAGAGGACGTGCTGTTCGGGTACACTAACTTCCTGCTACGTGAGGTGCAGGACACGCAGCAGGGCTTGCAGGACTCTTCCGTTAAACTGCTGCTGCATTTCCTGACACAGTGGAGGCTGGCGATACAGGCGCCTGGAAAACGCTCGGCGGAGATGGGATCTCAGAGCAGCGGGAGCTCCAGACTGCCACCCGAGCGCAGTCCTCACTCCACGGTGCTGCACGCTGTGGAGGGTCTAGCCCTGCTGCTGCTGTGCTCCTGCCAGACCAGCACTCGCAAACTGGCTGTGTCTGTCCTCCGAGAGATACGCTGCCTGTTTACAGCCATCGGACAAGCCGAGGATGATGATAAGTCTATGATCGACGTTATGGACCAACTGGCCCCCAGCGTGCTGGATAGTTTCGTCCATGTGGCTGTCTCTGACTCTGCCACACTGCCCATGAGTCATCACGTGGACCTGCAGTGGCTGGTAGAGTGGAACGCCCGCCTGGTTAACAGCCACTATGATGTAAAGAGTCCCTCTCATGTGTGGATCTTCGCCCAGTCGGTGAAGGATCCCTGGGTGCTCTGCCTCTATAGCTTCCTTAGGCCAGAGCACCTCCCCAAACACTGCTCGACGGCGCTCAGCTATGCCTGGCCCTATGCCTTTACACGCCTACAGCTGCTTATGCCACTTGTTGACCCAAACAGTCCCGTTTACGCCAAAAAGACCAGCACGCCAGGCCCGGCTGATGGCTATGTGACGCTGTGGAGGAATTACCTGATATTGTGCCTCGGTGTTGCCAAACCCAGCATCATGAGTCCGGGTCACCTGAGAGCCTCCACACCTGAGATCATGGCTACCACACCTGATGGCAGTGTTACGTATGATAACAAGGTGATAGGCACACCATCAGTGGCATGGCTCCTGAAACAGCTGGTTCCCCTCATGAGATCGGAGAGTTTAGAGATCACAGAGTCTCTGGTCCTCGGCTTTGGGCGAACAAATTCCCTTGTGTTCAGGGAGCTGGTGGAAGAACTCCATCCTCTAATGAAAGAAGCTCTGGAGAGGAGGCCTGAGAATAAGAAGCGGAGAGAGCGGAGAGATCTGCTCCGGCTGCAGCTGCTGCGTATCTTTGAGCTTCTTGCTGACTCAGGGGTCATCAGTGACAGTACTAATGGGGCGTTGGAGCGAGATTCCCTGGCTCTAGGAGCTCTTTTCCTGGAGTATGTTGATCTGACCCGGATGCTCTTAGAAGCAGAGAATGACAAAGAGCTGGATATTTTGAAAGACATGAGAGCTCATTTCAGTGGAATGGTGGCCAACCTCATCCAGTGTGTTCCAATCCACAACAGGCGGTTATTGTTCCCCCAGCAGAGCTTGAGGCATCACCTCTTCATTCTCTTCAGCCAGTGGGCCGGACCCTTCAGTGTCATGTTCACACCTCTGGACCGCTACAGTGACCGTAACCACCAGATCACACGCTACCAGTATTGCGCTTTGAAGGCTATGTCAGCGGTATTGTGTTGTGGCCCTGTGTTCGATAACGTGGGCCTTTCTACAGACGGATACCTCTACAAGTGGCTGGACAATATCTTAGCCTGCCATGATCTCCGGGTGCACCGGCTTGGCTGTGAGGTTGTCATCTTGCTCCTGGAACTAAACCCAGATCAGGTGAATCTGTTTAACTGGGCTGTAGATCGTTGCTTCACTGGATCATACCAGCTCGCTTCAGGATGCTTCAAAGCTATTGCTACTGTGTGTGGTAGCAGGAATTATCCATGTGACATTGTGACCCTTTTGAATCTGGTGCTGTTTAAGTCATCTGACACGAGCAGAGAGATTTACGAGATATCCATGCAGCTCATGCAGGTTCTGGAGTCCAAGTTGTCTGTTTACTCAAAGAGGATTGTGGGGCAGAAAACAGGAAATATCCTGTACGGCACACATGGTCCTTTACCGCCGCTATACAGCGTCTCTCTCTTCCAGCTCTCAAACCAGCTGGCCTGCATGTATCCTGAACTCACCCTGCCTCTCTTCTCAGAGGTCAGCCAAAGGTTCCCTACCACTCACCCTAACGGCAGACAGATTATGCTGACCTACCTGCTGCCGTGGCTGAACAACATAGAGCTGGTGGACACAGGACTGCTTCCCCCCACCTCCAGCCCATGCACCCCGGAGGAAGAGGCCCGTGAGCAGGCCGACAACCTGGGAATCACCCACAGGCTTAAGGGCAACGGCTGGGGCTCTCTGCAGGCTACCTCACTGGTCCTAAACAATCTCATGTTCATGACAGCAAAGTATGGAGACGAAGTCCCAGGTCCTGAGATGGAGAACGCCTGGAATGCTCTTGTGGCCAATGACAAGTGGAGTAACAACTTGAGAATAACGCTGCAGTTCCTCATAAGCTTGTGCGGAGTCAGCAGTGACACCACACTGCTGCCATATATTAAGAAAGTGGTGATATATCTGTGTCGGAATAACACCATTCAGACCATGGAGGAGCTGCTCTTTGAGCTTCAACAGACAGACCCGGTAAACCCAGTGGTTCTACACTGTGACAACCCACCATTCTACCGCTTTGCTGCCAGCAACAAGACTTCCGTTGTGGCCTCAGGCACAACGTCTAGCAGTAATACAGTAGTGGCCGGGCAAGAAAATTTCCAGGAGACAGATGAGGCAAAGATCGTCAGAGAGAACGAAGAGAGGTTGAGTAATGCAGCCCGGGCTCATAACCGTCTGGAATCACGTTACAGCAACAGCTCGGGAGGTTCTTACGATGAGGAGAAGAATGACCCTCTGCCTCCATATGCCGCCTGGCTGATCAGTGTATTAGAGAGTAACAGACCTCAGCCTCTTCCCATGCCCGTAAACGGAGGCTGTTGGGCTCCACTCGTGGACTACCTGCCCGAGACCATCACCCCACGGGGACCCCTTCACAGGTGCAATATAGCTGTGATCTTCATGACGGAGATGGTGGTGGACCACAGCGTGAGAGAAGACTGGGCCCTACACTTGCCGCTGCTTCTTCATGCTCTCTTCCTAGGTTTGGATCATTACAGGCCGGAGGTGTTTGAGCACAGCAAGAGGTTACTCCTGCATCTCCTCATCGCCCTCTCCTGCAACAACAATTTCCAGGTCATCGCCTCTGTCCTGTTACTAACCAGAGAGATCGGTGACAACAAGACCCTCACTGTTAAATCCAGCTACCAGCCTGAATACCCCTACTCAGGGGGGTTCGACTTCCTGCGAGAGTGGCAAGCGTCACCAGTGGCGGATTCTGGTCTAAGCTCGTCCTCCACCTCCTCCAGTGTGAGCCTTGGAGGAAGCATTGGAAACCTGCCACAAATTACAGCTGACCTGGAGGAGCTGGACGAGTCGTCCACAGAATCAGATGAGAAAACCAACAAGCTCATTGAGTTCCTCACCACCAGGGCTTTCGGACCGCTTTGGTGCCACGAAGACATCACGCCGAAGAACCCCAACTCTAAGAGCGTAGAGCATCTCACCAACTTCCTGCGGCATGTGGTCTCTGTGTTCAAGGAGTCCAAATCAGATTTCCATCTAGAGCATCAGCTGAGCGACGTTGCTTTGCAGACGGCCCTCTGCAGCTCCTCTCGCCATTATGCTGGACGCTCGTTCCAGATCTTCCGAGCCCTGAGACAGCCCCTTTCTGCCCACGCTGTGTCCGACCTGCTCTCACGCCTCGTGGAGGTTGTGGGGGAGCACGGGGATGAAGTTCAGGGTTATGTCATGGAGATTTTACTTACTCTGGAATCTGTTGTGGATAATTTAGCTGAATGTCTGAACAACAGTGAACTTATGGCAGCTTTGACAAGAGATTCATCGCCAGACTTCCTGGTGAGCGGGAAACTTAACCCAAACCGTAAGAGCACAGGGCAGCTGAACCTGCACCAAGAGGGTGGGACTAATGAGCGGAACAGGCACCAGCGCAGTTACTCTGTCCCTAAAAAGTTTGGCGAAAGCGGGGAAAACTCGTCCTCCAACCCTCCTCGCAGTGCCACATTAGACCGCATCCAAGCCTGTACCCAACAGGGTCTCGCTCGATCGGCCCGCAGCACGTCCTCCAACTCCACCCGCGCTGACACAAGTGTTATCACCGACCCGTCCCACTCCAGTCACCCAGCCAACCTGCTCGCCACCATCTTTTGGGTGGCAGTGTCGCTTATGGAGTCGGACTTTGAATTCGAGTATCAGATGTCATTGAGGCTGGTTCACAAACTGCTGGCGCGGGTTCCGTTGGATCTACAGGAGAACAGGGAGAGACTAGAGAAACTCCAGGCTCAGCTGAGGTGGAGTGGCTTTTCCGGGTTGCAGCAGCTGCTCCTAAAGGGATTCACTTCCCCAGCTACAAATGATCTTACGCTTCAGTTGTTCTGTCAGCTTACACCTGTTTCACGAGTGCCAGTGGTGGACACATCACAGGCTATAGGTTTTCCTTTGAATGTGCTTTGTCTGCTGCCTCACTTGGTGCAACACTTCGGTAGCCCTACACAGTTTTGTAAAGAAAGTGCTGAGAGGATCGCACAGGTGTGTCTAGAGGAGAAAGACAAGAACACTAAACTATCTCACCTGGCTCATGTAATGACCCTATATAAGACTCGTTCCTACACCAGAGACCCCTTCTCGTGGGTTAATGTGGTCTGTCGCTACCTGCACGAGGCTTTCTCTGACATCACGCTTAGTCTGGTGACATACATGGCTGAGTTGCTAGATAAAGGATTACCCAGCATGCAACAGCCCCTGCTGCAGATCATCTACAGTCTGCTTAGCCACATGGATTTGGCAGGAATTCAGGTCAAACCTTTCAATGTAGAGGTGTTAAAGACCATTGAGAAATTTGTACAGACGGTTCACTGGAAAGAAGCTCTGAACATTTTGAAGCTGGTCGTTTCACGCTCAGCCAGCCTATCCCTGCCGTCCTACGCCCATGGCGATCTAGCCCACCTGGAGGTTAGCCGTATGATGTGGGATGGCTCATCTAAAGCCTTGCCAGGAAAGACACTGGAATTCCATTTTGACATATCCGAGGCACAAAAAGCATTATGCTTTAGAAAATATCAGTTTTCAGTGCAATTACACGCAACAGGTTCTCTGACTCATTCACCTCTTGAGACACCGGTCATTGGCCGCAGATATGATGACCTGCAGGGATCTGGAGGGAGAGATGGGAAAGCTCGTGTGATAGCAGTGACCCGTAGCACGTCCTCTACCTCTTCAGGGTCCAACTCAAATACCGTCCTGGTGCCAGTCAGCTGGAAACGGCCACAATCATCACAGAAGCGAACGAGAGAGAAGCTGGTGAATGTTCTGTCACTTTGTGGACAGGAAGTTGGCCTCACCAAGAACCCGTCTGTGATCTTCTCATCTTGTGGTGATCTGGACCTCATGGAGCATCAGCCCAGTCAGGTGTCCTCTGAGGATGGGACCCGGGAGGACACCCTGGATGATACCACATCAGAGCAGCAGTTTAGAGTCTTCAGAGACTTTGACTTCCTGGACGTAGAGCTGGAAGATGGAGAGGGTGAGAGTATGGATAACTTTAACTGGGGAGTGCGCCGACGCTCTCTGGACAGCACAGACCTGACTGAGCTCCTGGAGGAGAGCCAGCACTCCGACATCACCCCCTGCATCGGCCTACACGACCCCCAGCAAGACTCTGATGACTCCTCAGAGGAAGAGTCCAATTCCACCAGCCAAAGCCTATCCCACTCTCAACTAACCATGAACCTCTCCCCCTCAGAGGACACCAATCATACAGACTCTCTGTCCACTTCCTATGACACCACATCAGCTGACCCAAATTCCCTTAATGCTGCAACACCCTGCTTGGGAACATCGCTACCAGATGACCACATCATGCCACCTGTTTTACCAGAAGACGAGGAGTCAAATGTCCAAGAGGACGACCTGCCATTCAATGTGAATGAGCTGCCAATGAGGTTTGACTGCGGCTCTAGCACTAATCTGGACCTTCCTGCAGAACAAAACCGAGCTGGAATAAACCAGAACCCAAACTCCCTGCCCAGCTACCATTTTGGGGAGGACCGAGATGATCTGGATGAGCTGGGCTTTCCTCCTCCACCCTCCCCATTTTTCTCTGCCATCTTGGCAGCATTTCAGCCCACGGTGTGTGACGATGCTGAAGAAGCCTGGCGGAGTCACATTAACCAGCTGATGTGTGATACAGATGGGTCTTGCGCCGTCTACACCTTCCACATTTTCTCTGCAATGTTTCAGAACATCCAAAATAAGTTCTGCTCCCTGACCAATGATGCTGCTAGTTACCTTGGAGACAGCCTGAGGGGAATTGGGTCAAAATTTGTGCGGTCATCGGAGATGTTGGCCTTATGCTCAGACTGTCCCACACTGTATGTGGACGCAGAAACGATTGTTTCATATGGTCTTCTAGAAAAGATGAAGTTCAGTGTTCTTGAGCTTCAGGAGTATCTGGACACATATAACACCCGGGAGGAAGCCGCTGTCTCATGGTTGCAGAACTGTAAGGCCACATTTCCGAGGTATCCTGATGATGGTGTGATCACCTGTCAGCCTGGAGACTCTGAGGAGAAGCAATTGGAGTTGTGTCAGCGACTGTACAAACTTCACTTCCAGCTCCTTCTGCTGTTTCAGTCCTATTGTAAACTCATAGGACAAGTGAACACCATCAGCTCTGTGCCAGAGCTGTGGAACATGTCTCGGGAATTGAGCGATCTGAAAAATTGCCTGCGGCTAGCTGAAGCCTCATTAGCTGGTGATCTAGAGGACCGGCAAAGGCACGGCTCCCAGCCCATCTTCCCCAGCTCTGAGGCAGCTGTACAGGCCATCCTGGAGTGCTTGAATAACAACGAGTTCTCTATGGCCATCCGCTACACTCAAGAGTGCAGACGAATGTGGCCAAATGACATTTTTGGGGGCGGCTCAGAGGACGAGATCCAGACTCTCCTCAACGTCTACTTCCGGCACCAGACTCTGGGCCAGACTGGCACCTTCGCACTGGTTGGCTCAAACAAGGACATGTCCGAGGTCTGCACAAAGATCATGGAGCTCAACGGAGAGATCCGGGACATGATCCGCCGCGCTCAGGGGTACCAGCGGAGAGGTTGTGTCTTTGTGAACCTGTCCATCACTTGCGTACCGCTAAATATCAGCCTCCGCACCTGCACAGACACACGCAAACAGGCTGACATTCAGCGATTTGTTCGTACAACTAAGCTACTGCTGAAGCTGATTCTACTTCAAGTGCTGATACAAGATTGTTTGGCTGTTTTTCAATCGACATCCTGCGCTCTGCCATACACAGGCTCACCTTTAGACTAAATTTGTATTTAAGAAATCAGTGTGTTGAACATAGTTTTTGAAATTGTTCTTTGTCGATTCAAGTTGCCAAGCATGCATCATTGTATTTACTTTTGAGTTGTATTTATTGAAAGTTGTATTTTA

Function

GO:

id name namespace
GO:0005938 cell cortex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU491296 lncRNA upstream 149562 16220030 ~ 16220408 (+) True G427866
TU491298 lncRNA upstream 150033 16218447 ~ 16219937 (+) True G427868
TU491468 lncRNA upstream 239890 16129707 ~ 16130080 (+) True G428027
TU491294 lncRNA upstream 272477 16091400 ~ 16097493 (+) True G427864
TU491461 lncRNA upstream 280798 16088069 ~ 16089172 (+) True G428020
TU491522 lncRNA downstream 21133 16422747 ~ 16422949 (+) True G428069
TU491564 lncRNA downstream 73608 16475222 ~ 16555622 (+) True G428099
TU491583 lncRNA downstream 248278 16649892 ~ 16654939 (+) True G428116
TU491669 lncRNA downstream 329993 16731607 ~ 16731828 (+) True G428188
TU491678 lncRNA downstream 377749 16779363 ~ 16780995 (+) True G428197
CI01000304_16358266_16367985.mRNA mRNA upstream 1630 16358266 ~ 16368340 (+) True CI01000304_16358266_16367985
CI01000304_16347460_16350144.mRNA mRNA upstream 19785 16346776 ~ 16350185 (+) True CI01000304_16347460_16350144
CI01000304_16315830_16336387.mRNA mRNA upstream 33042 16315168 ~ 16336928 (+) True CI01000304_16315830_16336387
CI01000304_16261912_16276701.mRNA mRNA upstream 92517 16261912 ~ 16277453 (+) True CI01000304_16261912_16276701
CI01000304_16255785_16257956.mRNA mRNA upstream 111818 16255785 ~ 16258152 (+) True CI01000304_16255785_16257956
CI01000304_16406577_16413911.mRNA mRNA downstream 4453 16406067 ~ 16414223 (+) True CI01000304_16406577_16413911
CI01000304_16433456_16438415.mRNA mRNA downstream 30815 16432429 ~ 16438531 (+) True CI01000304_16433456_16438415
CI01000304_16458657_16462430.mRNA mRNA downstream 56906 16458520 ~ 16463023 (+) True CI01000304_16458657_16462430
CI01000304_16470293_16490666.mRNA mRNA downstream 68639 16470253 ~ 16492041 (+) True CI01000304_16470293_16490666
CI01000304_16505174_16506124.mRNA mRNA downstream 103150 16504764 ~ 16506134 (+) False CI01000304_16505174_16506124
TU491458 other upstream 286256 16083230 ~ 16083714 (+) True G428017
TU491290 other upstream 480379 15885454 ~ 15889591 (+) True G427860
TU490061 other upstream 1419378 14948890 ~ 14950592 (+) True G426828
TU489538 other upstream 2039084 14330048 ~ 14330886 (+) True G426312
TU489575 other upstream 2791123 13556451 ~ 13573943 (+) True G426349
TU491561 other downstream 103248 16513714 ~ 16541045 (+) True G428096
TU491635 other downstream 354332 16755946 ~ 16761111 (+) True G428157
TU491628 other downstream 609116 17010730 ~ 17017194 (+) False CI01000304_17009769_17023302
TU491773 other downstream 913224 17314838 ~ 17314930 (+) True G428289
TU492630 other downstream 1280657 17682271 ~ 17684763 (+) True G429050

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00004306 False 9487 mRNA 0.51 61 NC_007121.7 33895315 ~ 33997136 (+)
bowfin (Amia calva) AMCG00016144 True 10218 mRNA 0.54 61 CM030122.1 9119568 ~ 9183910 (-)