RNA id: TCONS_00005380


Basic Information

Item Value
RNA id TCONS_00005380
length 1508
RNA type mRNA
GC content 0.46
exon number 10
gene id XLOC_002907
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 34960751 ~ 35002731 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCTATTTCAGTTGGTCACGGCGGAATCTGCGCTTTCTTCGCCCGCTGTGATCATGGCTGTGATGATGTGGTTTGTCAAGGCGACTTCCGCGTAGGTGTTTCTCTGTGACTGGAAGTAAAGTTCAACAATGGAGATTTAAGTATTTATTCCGTAATTTAGTACGACATCCATTCATATATGTCCCGCCTCGAGAAGTCACAGAGAGGCTGTTTTTAACGCTCCGCGTGCTTTAACTGAGCGGTAAACTGCTGTCAGCGTCTCTGCAGAGCAATATGTTGACTGAGATATGGAGGATGGAGTTCTGTTTATGTGACTTATTGCAGTATTCGCTGATCCTGGCTTTGGTCGTCTTATTACTGGTGTTGTTATTGCTGCTCACGTCACTGCGAAGATGGTCGATCAGACTCGCCACGAGAAGGAGAAACAGTTCCTGACTGCAGATGGCAAGCGTGAGGATTTCCCCAGTCTGATGGAGCCTCCTTCAATAGATCTGTCTGTGGTCGTCCCTTCATACAACGAAGAACTCCGATTGCCTGTTATGATGGATGAAGCAATGGACTACCTGGAGAAAAGACAGAAGGAGAATCCGTCGTTCACTTATGAGGTTATTGTTGTAGATGATGGCAGCAAAGACAAAACTACAGAGGTTGCCATGAAATACACCAAGAAGTATGGAGCAAAAAAAGTGAGAGTTTTGACGTTGGTAAAGAACCGTGGAAAAGGGGGTGCAGTGAAAATGGGAACTTTGAGCTGTCGCGGGCGACTTATTCTAATGGCTGATGCTGACGGAGCCACTAAATTTGCTGATGTTGAAAAGGTGGAAGAAGGTCTTGAGAGCATCACAGAGAAGCCTGATAACATGGCCATCTCCTGCGGATCCAGAGCTCACCTAGAAAAAGAATCAGTGGCTCAGCGATCCATGTTCCGGACGTTCCTGATGTATGGATTCCACTTCCTGGTGTGGTTCTTCTGTGTGAGGGGGATTAAAGACACACAGTGTGGTTTTAAGCTCTTCACTCGTGAGGCTGCTCTGAAAACCTTCTCCAGTCTGCATGTGGAGCGCTGGGCGTTTGATGTGGAGCTTCTCTTCATTGCTCAGTGTTTTGATATCCCTATTGAGGAGGTGGCTGTTAACTGGACAGAGATTGAAGGGTCAAAGTTGGTGCCGTTCTGGAGTTGGCTACAGATGGGTCGTGATCTAATCTTTATCAGACTGCGTTACCTCACTGGTGCCTGGAGACTGGAGTCTGAGAAGAAAACTCAATAGCTGATGTTACAGCTAGTGTGCTGTTCGTGAGCTAGCATTGCCACAAATGAGTACACTGCGAACGCAATCGGTGAACAGCaaccattagcattttattaTCACTGACCGTGCCGAGATCACAAAAGGGGATTGTCTTTCTATTTTTGTTATGCTGTTTTCCATGTTTTTCTTTTACATAATGTATTAGTTTGGTTTCAAAAAAGCAGATGGTTCTTGGCcaaataaaaaccaaaacaaatca

Function

GO:

id name namespace
GO:0007179 transforming growth factor beta receptor signaling pathway biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0061515 myeloid cell development biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005515 protein binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
ko04350 TGF-beta signaling pathway
ko04550 Signaling pathways regulating pluripotency of stem cells

ZFIN:

id description
ZDB-GENE-030131-6586 Predicted to enable dolichyl-phosphate beta-glucosyltransferase activity. Predicted to be involved in protein N-linked glycosylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Orthologous to human ALG5 (ALG5 dolichyl-phosphate beta-glucosyltransferase).

Ensembl:

ensembl_id ENSDART00000131279

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005378 lncRNA downstream 7894 34965764 ~ 34976723 (-) False XLOC_002907
TCONS_00005377 lncRNA downstream 14714 34965764 ~ 34969903 (-) False XLOC_002907
TCONS_00005372 lncRNA downstream 25439 34951060 ~ 34959178 (-) False XLOC_002906
TCONS_00005373 lncRNA downstream 26593 34951231 ~ 34958024 (-) True XLOC_002906
TCONS_00005367 lncRNA downstream 95597 34880648 ~ 34889020 (-) True XLOC_002904
TCONS_00006090 lncRNA upstream 51550 35054281 ~ 35058444 (-) True XLOC_002909
TCONS_00005392 lncRNA upstream 157279 35160010 ~ 35164291 (-) True XLOC_002912
TCONS_00005401 lncRNA upstream 310161 35312892 ~ 35321637 (-) True XLOC_002917
TCONS_00006091 lncRNA upstream 426773 35429504 ~ 35431655 (-) True XLOC_002919
TCONS_00005407 lncRNA upstream 647853 35650584 ~ 35654680 (-) False XLOC_002923
TCONS_00005376 mRNA downstream 3398 34961604 ~ 34981219 (-) False XLOC_002907
TCONS_00005375 mRNA downstream 3589 34961604 ~ 34981028 (-) False XLOC_002907
TCONS_00005374 mRNA downstream 7805 34960751 ~ 34976812 (-) False XLOC_002907
TCONS_00005369 mRNA downstream 68409 34905980 ~ 34916208 (-) False XLOC_002905
TCONS_00005370 mRNA downstream 68633 34908336 ~ 34915984 (-) False XLOC_002905
TCONS_00005384 mRNA upstream 9363 35012094 ~ 35051691 (-) False XLOC_002908
TCONS_00005383 mRNA upstream 9363 35012094 ~ 35051691 (-) False XLOC_002908
TCONS_00005385 mRNA upstream 9363 35012094 ~ 35052198 (-) False XLOC_002908
TCONS_00005386 mRNA upstream 9473 35012204 ~ 35030673 (-) True XLOC_002908
TCONS_00005387 mRNA upstream 57125 35059856 ~ 35108683 (-) False XLOC_002910
TCONS_00005358 other downstream 657223 34327262 ~ 34327394 (-) True XLOC_002902
TCONS_00005343 other downstream 951196 34032283 ~ 34033421 (-) True XLOC_002893
TCONS_00005331 other downstream 1607403 33377130 ~ 33377214 (-) True XLOC_002885
TCONS_00005330 other downstream 1607531 33377001 ~ 33377086 (-) True XLOC_002884
TCONS_00005329 other downstream 1607676 33376818 ~ 33376941 (-) True XLOC_002883
TCONS_00005403 other upstream 367106 35369837 ~ 35387242 (-) True XLOC_002918
TCONS_00005406 other upstream 617602 35620333 ~ 35620449 (-) True XLOC_002922
TCONS_00005408 other upstream 651514 35654245 ~ 35654354 (-) True XLOC_002923
TCONS_00005410 other upstream 1160448 36163179 ~ 36163294 (-) True XLOC_002926
TCONS_00005427 other upstream 1484887 36487618 ~ 36502331 (-) True XLOC_002940

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU491635 True 1163 TUCP 0.44 9 CI01000304 16755946 ~ 16761111 (+)
bowfin (Amia calva) AMCG00016117 True 1478 mRNA 0.46 10 CM030122.1 8034903 ~ 8044945 (+)
mexican tetra (Astyanax mexicanus) TU245563 True 1237 lncRNA 0.51 10 NC_035916.1 35254934 ~ 35269283 (+)