XLOC_002917


Basic Information

Item Value
gene id XLOC_002917
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 35312892 ~ 35321637 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005401
GCCTTGAATAACGTTTCATCTCAAGCGGAAGTTGCAGTTAGAGTGTTGGGAACTAAAATCCCAAAACAAGAAACAGATGCGTTGCTCGTAAATAAATACTTCTGCATTGTTTTGTAGTGTAAATGATGCGAATCCTTCACTTTAAAAATGAATAGCGCTATGAAAAAGTGGAAGCAGACGTGTGCAGATCTTGCGCCGGGTTTAGACCTGACATGCGGAATTGTGTCTGTGGTCGTGCTGTCGTGTTTTTTTAGTGTCGTACaatattgtttacatatttcgGGACACTTTTTCAGTCTGGAGTCCAGTGCTGTCATCCGCGGCCATGTCTACCAACTCCTCACCTATTTCCTCTACCACAAGAATATGGGTGATTTCCTCCTTGGTGGCCTCCTGATGGTGTTTCCCTGCAGGGGTTTGGAGAAAGGAGTCGGCAGCGTTAGATTCCTCCACCGGACGCTGCTTCTGTCCTCCATCACGGGACTCCTGTATGTACTTCTGGAGTCACTGCTGATCTCTCCGTCTAGCAGGAGCTCAGTTAACGGCCTCATCCCATTAGCTCTGTCCGTCCTGGGATTGATGACCATCAATTCTGGCATGAAGGTGGCCTATATAATGGGCATCAATGTGCCTACTTCTTCTCTGCCCTGGATTTTTCTAATAATCATAACCTTGTTCGTTCCAAACACGGTCTTCATGTGCAACGTCCTGGCTATCGTCACAGGGATATTATATGGAATGGGATGGTTTTCACTGTTGGAGATGTCTGAATCCACAGCTTCTGTTTTGGAGAAGAAGATCCCGTTTCGCTTGCTGAAGCACATCCCTGGTGTCCAGTTCATCCCTGCTTCAACTGAGGAACGTAAAAAGCCACTTGATCTCTCAGATGCTCCACCAGGGTCGTACCCGGTCCAGACTTATTCCCTGGTAAACGCCACCAACAGTCCAGTGGTAGGAAATCTGCCAAACACATTTAACGGCTGGCCCGTCTCACTGCATCCTCAACAGCAGCACACATTCCCTTCAGCTCAAGCCGGAGCCCACAATCATGGACACTCTCACGGTCATGGTCACAGCCATGGACATCATCATGGGCACAGCCATCATAACACTGGCAGCCCGTTTATGCCAATGTCACCATACGGTCTGTCTCAGTTCAGGCCTCCAGTGAACATGACAGGACAAGACTTCAGTAAACTACCTCAGCCAGGAGTGCCGTTCACACCTCACATCCCACCGACTGCCTTTCCTACAGCAACTCCTGGAGCCTCAGAGTCCTTATCCTCATAGAGATTTGATGACTTGTACGATGGTCACTGATTTGTTCCTTCATGGAAGCTTATTTCTGCCACAGAAAAAGggtcatttttactttttaaatcacagttttgatcttttttttttttttttttttttttgggggggggggttttGTAAAACTTTGTAGTAATTACTCATTTTTTCAGGAAATAAATTCACTTAAAGGTTAAAGGAACAGTGGACTTTAAATAATAaactcattttacagctcccctaGATTTGAGCAGTTgggttttatcatttttaaatccattctgATGATCTCAGGGTCTAAcgggagaacttttagcttaggaGTGTTTCATTTTTCCTTGTGTACTTTTTTCTCAGAATTAGGGCTGGTATAATAAACCAATATATTGTGATTCATGCAACAATTCTTAGATATTTTGTAATGCACCGTAATAATCTGGAATTGATTAACAGCTtatatttaacagcagatggcgctataggctggttttgaacagcagattgcgctctaggctagttttgaacagcagatggtgctctaggctagttttgaactgcagatggtgctctaggctagttttgaactgcagatggcgctctaggctagttttaaacagcagatagcgctctaggctagttttgaacagcagatggcgctataggctagttttgaacagtagatagcgctctaggctagttttgaactgcagagggcgctctaggctagttttgaacagcagatagcgctctaggctagttttgaacagcagatggcgctataggctagttttgaacagcagattgtcatctaggctagttttaaacatcagatggtcctctaggctagttttgaacagcagaaggtgctctaggctagttttgaacagcagatggcgctataggctagttttgaacagtagatagcgctctaggctagttttgaactgcagatggcgctctaggctagttttgaacagcagatagcactctaggctagttttgaacagcagatggcgctataggctagttttgaacagcagatggtcatctaggctagttttaaacatcagatggtcctctaggctagttttgaacagcagaaggtgctctaggctagttttgaacagcagatggtgctctaggctagttttgaacagcagatggtgctgtaggctagttttgaacagcagatggtgctgtagGCTAGATTTTAATTGTACACTTTTCGTGAGCACTGTATTCATGTACTACAAGTGGTCAAATGTATTACACAGTGTTCATGAAAAACACTCTTgtattttccttaaacattttgtTCAAGTGGGTGAGGATGTGTAAGGATTGGCTGGGTTGCGACTATAAAGCATACAGCATCATATGTTGAtgaaaactaagctcagaatcgaTTAAAGAATGAAGTAGAAAATCTTAGAGAGTCATTGCAGAATTGTTTATTGATTTGCAATGCATGgatttattgcccagccctactcaGATCTTAGTTTATATCACAAATTGTGAGTGAACATCTCAAAACTGCAAGACAAACTcatcattctgaaaaaaaaaatgataatgggGGTCATAATTGTGAGATGAATAGTTTCAATTACCCTTTAAAAGTTTATTATCCCATGATGGAAAATGGCTTCTGTATTGACCTCGAGTCTTGTTCCCAGAATTCAAATGGCTCCAGATGTGCACTTTCTAccattgatgttttttattttattttatacagcaGTTGCTACTGAACCTTTATATACTTTTGAACATTAAAGAATGAAATGAGT

Function

GO:

id name namespace
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0034470 ncRNA processing biological_process
GO:0070125 mitochondrial translational elongation biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0006260 DNA replication biological_process
GO:0006261 DNA-dependent DNA replication biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0005759 mitochondrial matrix cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0005680 anaphase-promoting complex cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko05016 Huntington disease
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005401 True 3086 lncRNA 0.43 4 35312892 35321637

Neighbor

gene id symbol gene type direction distance location
XLOC_002916 prr11 coding downstream 55331 35250205 ~ 35257561 (-)
XLOC_002915 smg8 coding downstream 64390 35238488 ~ 35248502 (-)
XLOC_002914 ypel2a coding downstream 75943 35201850 ~ 35236949 (-)
XLOC_002913 pom121 coding downstream 126582 35169644 ~ 35186310 (-)
XLOC_002912 BX465844.1 coding downstream 148601 35160010 ~ 35164291 (-)
XLOC_002918 gabrr3a coding upstream 46085 35367722 ~ 35410518 (-)
XLOC_002919 NA coding upstream 107867 35429504 ~ 35431655 (-)
XLOC_002920 si:ch211-244c8.4 coding upstream 216337 35537974 ~ 35542071 (-)
XLOC_002921 smg6 coding upstream 263010 35584647 ~ 35613752 (-)
XLOC_002922 BX663516.3 coding upstream 298696 35620333 ~ 35620449 (-)
XLOC_002909 NA non-coding downstream 254448 35054281 ~ 35058444 (-)
XLOC_002906 CT573139.2 non-coding downstream 353714 34951060 ~ 34959178 (-)
XLOC_002902 BX510654.1 non-coding downstream 985498 34327262 ~ 34327394 (-)
XLOC_002900 NA non-coding downstream 1114326 34196782 ~ 34198566 (-)
XLOC_002923 NA non-coding upstream 328947 35650584 ~ 35654680 (-)
XLOC_002925 NA non-coding upstream 490115 35811752 ~ 36093533 (-)
XLOC_002926 BX088524.4 non-coding upstream 841542 36163179 ~ 36163294 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000304_16902774_16907628 RHBDD2 coding CI01000304 null 16902100 ~ 16908819 (-)