XLOC_002915 (smg8)


Basic Information

Item Value
gene id XLOC_002915
gene name smg8
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 35238488 ~ 35248502 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005397
CGCAAACATGGCGGTGCCTATGAACATCAAAGCGCTGTTACAGTCAGAAATAATAGAAGACGCCGCCGACAAGGATGAGGGTGTCTGCGTTTTGGGCATATTTGGGAAAAGCGCAATGCAACCCGGATCAGCTAAAGACTCTCTCATCAACACCTTGGCAAATAAACACATCTTCTCTCTCTTCGGGAGCGACGACACTGACAGTCCGGGCGGAGGAGCTGCAATACAGGCGTATTATAATCAAGAAAACCGCGTGCTGTATCTCGTATTAACGTCTGTTTTTGACAACCGCCATCTTATTCGTGCGTGCGAGTCTTTGACGGTAGGTCTAGGTCACGCAGAAGCCCACGAGTTTTGGAAAGCGGCAGAAAAAGAGCACTGTTTGCAGCTTCTGTATCTGTTTTCACTATGTCACATTCTGCTGCTCGTTCACCCGACGTGCTCGTTTGACGTTAGCTATGATAGAATGTTTCGCGCTTTGGACGCGTTGCGTCAGAAAGCGCTTCCTCTGCTGCGTGCGGCCATTAAAGATTCGCCAATATCAAAGGAGTGGAAGTTAAATTGTCGCCCGTGTCCTCCGCGCCTCCTGTTTGTCTTCCAGATGAACGGAGCGCTCAGAGTTGGCTCTTGCATGGGTGGGAATGGGACTGATGGCACTGGGGTGGAAAAACCCAAAAAACACTCTCCTAGACGGCGAATGCAGCATGCTTTGGAGGATCAGATATACAGGATATTCAGAAAAAGTCGTGTGTTGACAAACCAGAGCAGTAATTGTCTCTTTACAGTGCCTGCCAATCAGGCTTTTGTATATGTAGTGGGAGGACCAGATGAGGACCCCATTGGCACTCTGTTGGGTCACTTACGCTCCAATTGTGCTTTTCGAGAGAATGAAGGTGGCACACCTGTGCCCGGGCAGAGGCGTTACCAACAGATGAGGCACTCCAACAGACAGCCATCTTTCAATGTGGAAAGCAGTCTTTCCTCAGGGGGACAGTTGGTGGACTGCACCCTAAAGGAGTTTCTCTGGCAGCATGTTGAACTGGTGTTGACCAAGAAAGGGTTTGATGATAGTGTAGGCCGCAATCCGCAGCCCTCACACTTTGAGCTGCCTACCTACACCAAATGGGTGCACGCTGCATACAAGCTTTATCAGGTCATGATAGAGAGTGTTGAGGAAGACGCAGCCGAGATTTCCCTCAAGGTGCAGGGGCAGCTCAAAGTGCTGGAGGGCTTCCTGGATGCGGATGCCAAGTTCTCTGAGAACCGCTGTCAGAAAGCCTTGCCCTTGGCTCACAGCGCCTACCAGTCAAACCTGCCCCATAATTACACCACCACGGTGCACAAGAATCAGCTGGCGCAGGCGTTGAGGGTGTACAGCCAGCATGCCAGGGGGGTTGCTTTTCAACGCTACGCTTTACAGCTTCATGAGGATTGCTACAAGTTCTGGAGTAACGGGCATCAGCTCTGTGAGGAGCGCAGCCTTACGGATCAGCACTGCGTACATAAGTTTCACCTGCTGCCAAAGCCTGGTGAGAAGCCAGAAATGGAGCACAACCCACCTATTCTATACCACAACAGCAGGGGTCGCTCTACAAGCTCCTGTAACTGTGGTAGGAAGCAGTCTCCGAGAGAAGATCCCTTTGACATCCAGACTGCCAATTATGACTTCTATCAAATGCTTGAGGAGAAATGCTGTGCTAAACTGGAAAGGATAAACTTCCCAGTGTTTCAAGCTAGCACGCCTGACCCGGCTCCTGCCAGCGACGAGGTGCCCAGACCAGGAGAGGTTCCTCCGTCAGGGGAAGCTGATCGCCTGAAGGAGAAAGAGACCAGCACTCACACCCCTGGGGAAAGCACGAGTCTAAGTCTCGCTCTCAGCTTGGGCCAGTCAACGGACAGCCTTGGAACATACGCTGACGGAGCAGAAGGACAGGAGAAGAGACCAAGCTTGGTGGACCGACAGCCCTCCACTGTGGAGTATCTTCCCGGGATGCTGCATTCTGGATGCCCGAAAGGATTGTTACCCAAATTCTCTAGCTGGTCTCTTGTAAAGCTTGGTCCGGCCAAATCCTACAACAGCCTCACTGGTTTAGAGCAACCTGGATTCCTCCCAGGCTCTGCTTTCCTCTTGCCGTGGGATGTAGTGATTCGAAGCCGATCTGAGGAAGACGTGGGATCCCTTGAACCTCTGGACGGAGGCCCGGCGTCCTGGCCGGCACCAAATAAAGCATCAGCTGGAAAGCGAGGCAGCGCTGGAGGAATCGGTCGAGGGCGCAGACGGGATGATGTAGCTCGTGCTTTTGTTGGTTTTGAGTATGAGGACAGCAGAGGGCGCCGCTTCCTCAGTTCTGGCCCTGATAAAGTGGTTAAAGTGCTTGGACAAGGTGGACCAAAGGAGCCTGCAACCAGATGCTTGAATTCGGATATGCCTCTGTATATTCCCTCTCCTGCTCAGGGACGAGGCATCAAGCCACATTACGCTCAGCTGGCTCGACTTTTTGTTGTTGTCCCTGATGCTCCTCTTGAGATTGTCTTAAACCCACAGGTCCAGCCAGGTCTCCCTCCCTGTCCCATCTTCCATCCAGAGCAACCTGAAGTGGTGCTGCCCTCTGATGGACTCTGGGTGCTTCGCTTCCCTTATGCCTACGTGACAGATCGTGGTCCCTGCTATCCTCCAAAGGAGAACCAGCCACTGGCTAACTTCAGGGTGTTGAGAGGCATTCTGCGTGCCAACACGACTAGTTCTACCccacaataacaaaaaaacacaaaccatGCACTTTAAAACACTGATGTGACATTCAGAGGAttacttttttttgctttatattaGGAATCAATCTGTTGACACCATGCTTCATCGCCTTTTCAGTTCAAGTCCTTTTTTTTTAACACGACATTCAAACAATAGTGGTTGTAAATACAGGCAATTCAATTACAGAAAGTTTACTGTCAATAAATCCCTGCAGtgaggaaaaaaaactaaacaaatagcGAA

Function

symbol description
smg8 Predicted to be involved in nuclear-transcribed mRNA catabolic process, nonsense-mediated decay. Orthologous to human SMG8 (SMG8 nonsense mediated mRNA decay factor).

GO:

id name namespace
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay biological_process

KEGG:

id description
ko03019 Messenger RNA biogenesis

ZFIN:

id description
ZDB-GENE-091204-279 Predicted to be involved in nuclear-transcribed mRNA catabolic process, nonsense-mediated decay. Orthologous to human SMG8 (SMG8 nonsense mediated mRNA decay factor).

Ensembl:

ensembl_id ENSDARG00000061378

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005397 True 2998 mRNA 0.51 4 35238488 35248502

Neighbor

gene id symbol gene type direction distance location
XLOC_002914 ypel2a coding downstream 1539 35201850 ~ 35236949 (-)
XLOC_002913 pom121 coding downstream 52178 35169644 ~ 35186310 (-)
XLOC_002912 BX465844.1 coding downstream 74197 35160010 ~ 35164291 (-)
XLOC_002911 ripk4 coding downstream 85100 35114153 ~ 35153388 (-)
XLOC_002910 C10H21orf91 coding downstream 129805 35059856 ~ 35108683 (-)
XLOC_002916 prr11 coding upstream 1703 35250205 ~ 35257561 (-)
XLOC_002917 NA coding upstream 64390 35312892 ~ 35321637 (-)
XLOC_002918 gabrr3a coding upstream 119220 35367722 ~ 35410518 (-)
XLOC_002919 NA coding upstream 181002 35429504 ~ 35431655 (-)
XLOC_002920 si:ch211-244c8.4 coding upstream 289472 35537974 ~ 35542071 (-)
XLOC_002909 NA non-coding downstream 180044 35054281 ~ 35058444 (-)
XLOC_002906 CT573139.2 non-coding downstream 279310 34951060 ~ 34959178 (-)
XLOC_002902 BX510654.1 non-coding downstream 911094 34327262 ~ 34327394 (-)
XLOC_002900 NA non-coding downstream 1039922 34196782 ~ 34198566 (-)
XLOC_002922 BX663516.3 non-coding upstream 371831 35620333 ~ 35620449 (-)
XLOC_002923 NA non-coding upstream 402082 35650584 ~ 35654680 (-)
XLOC_002925 NA non-coding upstream 563250 35811752 ~ 36093533 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000304_16868092_16872772 SMG8 coding CI01000304 null 16867882 ~ 16872772 (-)