XLOC_002913 (pom121)


Basic Information

Item Value
gene id XLOC_002913
gene name pom121
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 35169644 ~ 35186310 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005393
TTTAACTTTGGGGCGTCACTTTCATCAACACCATTTGGGACCCCTGCGCCTGCAGCTCAACCCCAAGGGTTTTCTTTTGGAGCCAATAACACTGACAGCAAGCCTGCTTTTGgtgcTTCACCAGCCAGCTTCTCTATTGGGACGGGTACTAAAACCTCTGGGGCTCGTCGATTACAAGCACGCAGGCAACACCCACGGAAGAAGTAACACAGCTGAAGTGAGTCCGACTCGTCTTTCTTGTCGTTTGGACTCTGTTACTTCCTCCGACTGTCCCAACTCTGCTGCTGGTCCAAACACAGACCTCATCTCTACAACCCTCAGACTGCCAGGGCTGGTCAGGCTTGTAGGATCAAGGCTCGTGGAGTGTAGAATTTTAGCCCAATCTCTCGCCCACCGAATCTCATCATGACCTCACTGATGGAGTCTGATGAGGGCGTCTGGTGTTGGGGAAGGATGGCGAACGGGAGTAAATTATacttgaaagaaagaaaaaaaaataagactttcaaaATCTGGACTCACACATGAATTTCAGTCCAGGCCTTTCAAAAGAAAAGGAACTTTTTTGGGTCGAGTAATCAGATGCTCTTTATTTTAAATCCGGTAATTAcaccctttttttgtttgttaacctACATGTCATGCTTTTCCATCATGCTTAGCAGAATCGTCCATTTTGTTAAGCCTTCAAAACGtgaatattttaatgtttcatttaaagCAATTTTCTTCTTTGAGTGAGCTGCATAATAAACAATCTTAATTTTA
>TCONS_00005394
TGGGATATCTTCCCTCGGCGGCGCGGTGCCGCCATGTCTCCAGAAGATAAACGGCGGCTAGTCGTTTTCTCCGCTGTGGTCTTCTCTCTCTTCATTCTTTTACTCGTTTTGAGCTACATACCAGCTTATTTGTACATACTTTTTATCTGTGTCGTGTCTTGTGTCGTTTATTTTCATAAAGCGGAGGAGTTACAGCTCTTCGAGAGACTAGGCCTCAATCCACGCCGTGGCCTGAGCGTCCCGCCGGCTCTGCTGCGCTGGTTGCCGGGCAGGACTTTTAGCGGTGTCCCGGCCGCCGGCAGAAACAAGATACGCAAAAGTGATGCTAGAACCTCTTTCGCGTCACCCAGCGATAGACACTTTGTGGGCTCGTACTATAGAAGAGAGCAGCTCAGTGAGTCGGTGTTCAGCCCTCGGGATATACTCATGGGAAGTTACCTCGCCAAGCCCGAAGAAAGCCCCTCCGCCGCGGTGAGGCCCGCCGGGGGATCGGGGTCTTTCATGCACCCCAGAGAACAGCTCCGGGAGAGACTCGCCCGACCCAATCATGCCGTTCACACCCCTAACAGAAGACTGTCATTCGGGGACCCTGCAGGAAATGCGAGCCGGTTCACCATCACCCCCCAGAGACATTACCCCCTTCAACAGACAGGCACATCTCCCATTGGAGTCATGCCACCGGCAAAATGGGATGGATACCGTAAGAAGAATATCCTCACCCAACGCAATTCACCTACTGTTCACAGTCCAGTCACGGTGAAGATCGCCAGACCAGACTCCACTCGGTCATCATTctttaatcACCTGAACTCCCCTGGAGCCGTCACCTCTCCTGGGATTGGAGCACAGGCTGACCCCTGCTCCAGAGAGGCTGTCCTGAGCGTGCTCAGAGAGAGCAGGAAGAGAGAGGTTGATGAGGAGGACAAGAGTGCTTCCTCAGGGCAGAAGAGCAAAAGGAGGCGACATGACAGCAGTGGAAGTTCTCAGTCAGCGTTTGAGCCTCTTCTTGCAAATGGAGCTCCGTCTCAGCTCGTGCCAAAACCTGGCAGTCTGAAGAGAGGCATGAACTCTTCTCTCATTGAAGAGTCCATCATGAAGCGGTCTCGCACCTCCTCTGTCAGCTCTATAAGTGGTGCTCCTGTTCCCAGTGGTGTACCTGGATCTGTCCGAAATCCCATTCGCAGTTCCTACAGCTCCTCACAGGGTTATCCACAGAGACGAGCAGCATCCAGTCTCAGTCTTTCTCCCTTCACAAGCCCAGGAGGATCTCGGTGTCAGACTCCAGAGCGAGCTGCCAAGAAAGCAAGGGAGGAAGATGCTACCTCACCAAGTTCAACATCCTTCGCTAAAACGGATAAGGTGGCAGCTGATCCTGACCCTTCTCCAAATACAACTAAACTTACCCCAAAATCTGAGGCACCTGTTGCGACATCAACGTCAGACTCTGGAAGCAGCGGTGGCAAACGTAAACGCAAAATTCAGCTGGTCACCACAAACAGAGGAGATCAGATTTCTTTGCCACCACCTCCTGAGGTTGGATATACAATCACAGTGAAAGATCTAGATATGGAGAAGAAAGCCGCTCTCAGCAAGATACAGAAAGTCCTGGAGGAGCCTGaaccGGAGATTCCTCCTCCAGCATCTGAACCTGCTCCTGCCCCAGTTTCAGCTCCCACTTTATCCCTGTTCTCTCAGCCAGCTCCAATCTCCACATCCGGGACAGCACCTGCTACGAGCGTTGTTCCCTCTCTGCTTTCTCTCTCCACACCCAAGCCTGAGACCACACCAGCTATTACTACAACTCCTGCTCCAACTATTGACCTAACCATCACTGCGTCCAGCACGGCCAGCTCTGCACCTCTAACCCTCATCTCATCCCCCGCCATCACTACCGCATCTCTAACAGCTGCCACAACTGTTTCAACTGCACCAGCTTCAAGCATTTCAAACCCCCTGCTGGAGTCTCTGAAAAACATGAAGAATAATCCTCTTCTCACTGCTCCGACTCTGATGGGCACTACCACTGCAGCTCCAGCAGTGCCTGTATCCAGTCTTTCTGCTCCTGCTGCATCCATAATCCCAAGCAGTGGAGTTGTCAAGTCTGAATCGGGTCCCACTGCTCTGCAATCCTCATTCTCTGCCCCATCCTCCATATCATCACCTGCTTTCAAACCAGCCACCTCCATGCCCTCCACCTTTGCTCAGATCCTGGCCCAACCTCTTCAGCCCCCATCAACCATTTCATCGCTGGGTGGAGGCAGCAGCCTGTTTAGCTTGATCAAACCTGTGGCCACACCTGCATCTGAGCCTCCCAAGTCTACAGTTGCCGCACCTACAAACACAGCTGCATCAGTCAACAGCATTAGCAATCCTCTCTCATCTGGGTTTAAGCCCATTTTCAGTGCAGCAAGCACCACCCCTGCTTCAACACCCGAGGTCAAACCCACCCAGCCCACCTTCAAGCCTTTATTTGGCAGCACCACAATTAGTGGCGTTAGTGCATTCGGGCAGACCATCACACCGACAACATCAACCCCTGCAGCTCCAGCCTCACAGAACAGTGCGATGTTATTTGGTGGATTAACCAGTACCCAGCCAACAACAGTGCCCTCTTCTGCCGCCCCGGCCACACAGACTCCCTCCCAGTCTCTGTTTGGAAAATGGTCCACACCAACCACATCTGCTCCTGCCACAAACCCCACGTTCCAGTTTGGAGCTACATCAACTACTACGGCAACACCTGCGCTGAACACCAACACTGCTAGCGTTGGCAGCGCTAACTCCGCTTTTCAATTTGGTGCAGCAAAACCAGCTGCCGCCCCACAGGCCCAAAACACGTTCACATTTGGCCAGCAGTCCACGAACCAGAACTCCACAACAACTCCATTTGGTGGATTCGGTGTGACCAGCAATGCCACCACGTCCTCAGAAGCGCCCACAACACAAACCACATTTGGAAGCTCGACTTTCACCACATCATCCAATTTCCCAGCATCCACACCGCAGGCCCTCGCTGCTCCAAAGCCTTTCGCATTTGGAGCCGCCGGCGCAAGCAGCGGTGCATCACCGTTCACATTTGGCACCGCTGCCAGCACATCAGCACCTGCATTTGGGACTAATAGTCAGCCTGCATTTGGTGGAGTGTCATCCGGCTTTTCTTTCGGAAACACCACCACACCTTCTGCAACACCTGTCTTTGGGGCCACCACACAGACTGCGGCCCCTGCACCTGCCCCAGCACCTACGTTCACCTTTGGAGGGGcaccaacagccaatcagaacactgcACCAAGTACTCCGGCTCCTCCTGCCTCTGGAGGGTTTAACTTTGGGGCGTCACTTTCATCAACACCATTTGGGACCCCTGCGCCTGCAGCTCAACCCCAAGGGTTTTCTTTTGGAGCCAATAACACTGACAGCAAGCCTGCTTTTGGAACATCGACTCCTGCTTTTGGCCAGGCGTCTCCAGGAATGTCCATGCCATTCGGCAGTCCTGGAACACCAGGATTTGGAGCAATGGGCGGCTTGGGTGCTTCACCATTTGgtgcTTCACCAGCCAGCTTCTCTATTGGGACGGGTACTAAAACCTCTGGGGCTCGTCGATTACAAGCACGCAGGCAACACCCACGGAAGAAGTAACACAGCTGAAGTGAGTCCGACTCGTCTTTCTTGTCGTTTGGACTCTGTTACTTCCTCCGACTGTCCCAACTCTGCTGCTGGTCCAAACACAGACCTCATCTCTACAACCCTCAGACTGCCAGGGCTGGTCAGGCTTGTAGGATCAAGGCTCGTGGAGTGTAGAATTTTAGCCCAATCTCTCGCCCACCGAATCTCATCATGACCTCACTGATGGAGTCTGATGAGGGCGTCTGGTGTTGGGGAAGGATGGCGAACGGGAGTAAATTATacttgaaagaaagaaaaaaaaataagactttcaaaATCTGGACTCACACATGAATTTCAGTCCAGGCCTTTCAAAAGAAAAGGAACTTTTTTGGGTCGAGTAATCAGATGCTCTTTATTTTAAATCCGGTAATTAcaccctttttttgtttgttaacctACATGTCATGCTTTTCCATCATGCTTAGCAGAATCGTCCATTTTGTTAAGCCTTCAAAACGtgaatattttaatgtttcatttaaagCAATTTTCTTCTTTGAGTGAGCTGCATAATAAACAATCTTAATTTTA

Function

symbol description
pom121 Predicted to enable nuclear localization sequence binding activity. Predicted to be a structural constituent of nuclear pore. Predicted to be involved in RNA export from nucleus and protein import into nucleus. Predicted to be part of nuclear pore. Orthologous to several human genes including POM121 (POM121 transmembrane nucleoporin).

GO:

id name namespace
GO:0006606 protein import into nucleus biological_process
GO:0006405 RNA export from nucleus biological_process
GO:0005643 nuclear pore cellular_component
GO:0008139 nuclear localization sequence binding molecular_function
GO:0017056 structural constituent of nuclear pore molecular_function

KEGG:

id description
ko03013 Nucleocytoplasmic transport
ko05014 Amyotrophic lateral sclerosis
ko03019 Messenger RNA biogenesis

ZFIN:

id description
ZDB-GENE-030131-6557 Predicted to enable nuclear localization sequence binding activity. Predicted to be a structural constituent of nuclear pore. Predicted to be involved in RNA export from nucleus and protein import into nucleus. Predicted to be part of nuclear pore. Orthologous to several human genes including POM121 (POM121 transmembrane nucleoporin).

Ensembl:

ensembl_id ENSDARG00000055113

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005393 False 768 mRNA 0.44 2 35169644 35177257
TCONS_00005394 True 4200 mRNA 0.52 13 35169644 35186310

Neighbor

gene id symbol gene type direction distance location
XLOC_002912 BX465844.1 coding downstream 5353 35160010 ~ 35164291 (-)
XLOC_002911 ripk4 coding downstream 16256 35114153 ~ 35153388 (-)
XLOC_002910 C10H21orf91 coding downstream 60961 35059856 ~ 35108683 (-)
XLOC_002909 NA coding downstream 111200 35054281 ~ 35058444 (-)
XLOC_002908 supt20 coding downstream 117446 35012094 ~ 35052198 (-)
XLOC_002914 ypel2a coding upstream 15540 35201850 ~ 35236949 (-)
XLOC_002915 smg8 coding upstream 52178 35238488 ~ 35248502 (-)
XLOC_002916 prr11 coding upstream 63895 35250205 ~ 35257561 (-)
XLOC_002917 NA coding upstream 126582 35312892 ~ 35321637 (-)
XLOC_002918 gabrr3a coding upstream 181412 35367722 ~ 35410518 (-)
XLOC_002906 CT573139.2 non-coding downstream 210466 34951060 ~ 34959178 (-)
XLOC_002902 BX510654.1 non-coding downstream 842250 34327262 ~ 34327394 (-)
XLOC_002900 NA non-coding downstream 971078 34196782 ~ 34198566 (-)
XLOC_002919 NA non-coding upstream 243194 35429504 ~ 35431655 (-)
XLOC_002922 BX663516.3 non-coding upstream 434023 35620333 ~ 35620449 (-)
XLOC_002923 NA non-coding upstream 464274 35650584 ~ 35654680 (-)
XLOC_002925 NA non-coding upstream 625442 35811752 ~ 36093533 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000304_16838208_16848663 POM121C, POM121 coding CI01000304 null 16837747 ~ 16849079 (-)