RNA id: TCONS_00005384


Basic Information

Item Value
RNA id TCONS_00005384
length 2678
RNA type mRNA
GC content 0.53
exon number 22
gene id XLOC_002908
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 35012094 ~ 35052198 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGCTTGAATGGTGTGTTTGTGGAGGTGACAGTGCTGGTGTAACACAACATCGCCTCCTGTCACACAGCAAGCACAATGCAACAAGTCCTAGAATATGCATTGGATCGGGCTGAGGTATTTGTTTCATCTTATTCTGTATTATATTGTGCATTTATTGTACGTTATGGTATTTAATTTGTGACCAACTGTAAATTgtaattttctgttattttgccaattatttattaatgtatttatatctCCTTCAGTACATTGTAGAAAGTGCTCGTCAGCGACCAGCGAAGAGGCGGGTGTCCTCCAGCGGAAGGAAATCCTTATATCAGAAACTTTATGAATTGTACATTGAAGAGTGTGAAAAAGAACCAGAGTTGAAGAAACTGAGGAGAAATGTGAATCTACTACAGAAACTGGTCTCACAGGAGTCCGTCTCGTGTCTGGTGGTTAATCTGTACCCTGGCAATGAAGGATACTCGCTTATGCTTAGAGGAAAAAACGGATCTGATTCAGAAACGATTCGGCTTCGCTATGAAGAGGGTGAGTTACTGGAATACCTGGATGCAGAGGAGCTGCCGCCCATCCTTGTAGACCTTCTGGAAAAATCACAGGTGAATATTTTCCACTGTGGCTGTGTGATAGCCGAGGTCAGAGACTACAGACAGTCCGGAAACACAAAGATGCCCACATACCAGAGCCGGCACATCCTGCTGAGACCCACTATGCAGACCCTGATCTGTGATGTTCACGCCATGACGAGTGACCACAAGTGGACGCAGGATGATAAACTTCAGCTGGAGAGTCAGTTGATTCTGGCTACAGCAGAGCCTCTGTGTCTCGACCCCTCCATCTCTGTCAGCTGCACCACCAACCGTCTGCTCTACAACAAACAGAAGATGAACACGCGCTCCATGAAACGATGTTTTAGGAGGCATTCGCGAGCAGCTCTGAACAGACAGCAGGAAATCATGAGCCACTGTCCTGCACTGCCGCAGCTTCGACTGCTGGATTACCTGCAGAGGAGGAAAGAGAGGAAACCTGCTCCCTCCATAGACCTGAAGATCTCCAAAGCTGGAAACTGTGTGGACATGTGGAAACAGAGCAGTTGTCAGCTGACCACCCCTGCAGAAATCGACGTGGAGAAATACGCAGTGGCAGAGAACGCTGCCAAACTCGATGACACTCAGCCCACTGTTTGGCCTGCGCAGgacataaGGGACGACTACACTTTCGAGTGTGAAATGGGAGGCCAACTGCAAAGAACAAAAGTCACAATCTTCCAGTCTATGGGAGACCCGCTGGTCTACGGAAAAATCTACAGCGCCAAAGACTCCAAATTAGAGGAAGACGTCACAGACCTGCACCTCATTCACCCACCATTCCTCATAGGTTCAAAGACAGATGCTGATCGGTTTCTGATGCAGTACAAAGAGGTGTATGAACGAGACGTCAAGTGTCAGGTCAAGATGTTGCACAACTCCCAGAGCCAGCTCTCGCCCTCCAGAGAGAACGAGACTGATGGTTTCTCTGCTCTGGTCCAGTCTTCGGTTTTAGGAAAAGGTGTCAAACACAGACCTCCTCCTATCAAATTGCCAGCCGGCTCAGCCTGCGCCTCCTCAGGTAACCCGTACAGTACACAGGCCTCCAGTGGGCATCTGAAGTGCCCGACTCCTCCACCCTCAAAGAATCAGTCGCTCTCCCGGAAACACTCCATAGAGCTCGGCCTGCTGTCTCCTGCTGCTCTCTCGCCCATGCAGAGATCAGGTACTCCCAAGCCCTCCACGCCCACCCCCACAAACACGCCTTGTTCAACGCCACACCCTGCCGATGTTCAGAGTGCCACGCCCTCCGTCACGCCCACCCCACAGGACCCCACACTTCCACAGCCGCCCACCCTTTTGACGCCTTTTGCCCAGCAGCAGATGACTTTGCCCGTCATGACCATCCCCCTGCCCACATCCAGCACCACGTCTTCACAGGTCATGACCAACCCTGCGGGTCTCAACTTCATCAACGTAGTGGGCTCAGTTTGCAGTCCGCAGACGCTGATGAGTGGCTCTAACTCGATGCTGGGTTGTAGTCCTGGGACTCTGGCATCTGGTATCCCACTGAGTGGACTTTTACCTTCTGGCGGACTCATGTCTGGAACTCTGCCTGCCATGCAGCCTGCAGCTCCAGGAGGTGGGCCTTTCGGTCTGAACAGTAGTCCAGGACTCCGGCCGCTCAACCTCCTCCAGcttcCTACGGGACCACTGATATTTAACTCACTACAGCAGCAGCAGTTTTCCCCTCAACAGCAAAGCAGTCAGTCGGCCACATCCAGCCCTCAGCAGCAGGGGGAGTCGGCTGACGGGGGTCTGACGGCAGAGCAGGGTCTGTCAGCGCAGCAGACGGCCGTCATTAATCTTACCGGCGTCGGAGGATTCATGTCTCCTCAAGCAGCAGTGCTGTCCCAGCTGGGTTGTGGTCTGGAGGGGTCCGGGCCCAGCTTACCGTCCCCGAGGCTCCAGCAACAGCACCAGCCACAGATCCAATTGCAATTCTTGCAGCACCAAATGCAACAGCAGCAAATGGGTATGGCAGTGGGGGCGGCGGCACAGGCGGCTCTGCCACGCCCACATTCCGCCAACCAGCCAAAAAGTAAACGGAAGCGCAGCACGCCGCAGCCCCTCTCCAAATCATGA

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0000124 SAGA complex cellular_component
GO:0003712 transcription coregulator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-091204-264 Predicted to enable transcription coregulator activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be part of SAGA complex. Orthologous to human SUPT20H (SPT20 homolog, SAGA complex component).

Ensembl:

ensembl_id ENSDART00000190711

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005382 lncRNA downstream 19666 34984618 ~ 34992428 (-) True XLOC_002907
TCONS_00005378 lncRNA downstream 35371 34965764 ~ 34976723 (-) False XLOC_002907
TCONS_00005377 lncRNA downstream 42191 34965764 ~ 34969903 (-) False XLOC_002907
TCONS_00005372 lncRNA downstream 52916 34951060 ~ 34959178 (-) False XLOC_002906
TCONS_00005373 lncRNA downstream 54070 34951231 ~ 34958024 (-) True XLOC_002906
TCONS_00006090 lncRNA upstream 2590 35054281 ~ 35058444 (-) True XLOC_002909
TCONS_00005392 lncRNA upstream 108319 35160010 ~ 35164291 (-) True XLOC_002912
TCONS_00005401 lncRNA upstream 261201 35312892 ~ 35321637 (-) True XLOC_002917
TCONS_00006091 lncRNA upstream 377813 35429504 ~ 35431655 (-) True XLOC_002919
TCONS_00005407 lncRNA upstream 598893 35650584 ~ 35654680 (-) False XLOC_002923
TCONS_00005380 mRNA downstream 9363 34984617 ~ 35002731 (-) False XLOC_002907
TCONS_00005379 mRNA downstream 9635 34980486 ~ 35002459 (-) False XLOC_002907
TCONS_00005376 mRNA downstream 30875 34961604 ~ 34981219 (-) False XLOC_002907
TCONS_00005375 mRNA downstream 31066 34961604 ~ 34981028 (-) False XLOC_002907
TCONS_00005374 mRNA downstream 35282 34960751 ~ 34976812 (-) False XLOC_002907
TCONS_00005387 mRNA upstream 8165 35059856 ~ 35108683 (-) False XLOC_002910
TCONS_00005388 mRNA upstream 8194 35059885 ~ 35103208 (-) True XLOC_002910
TCONS_00005389 mRNA upstream 62462 35114153 ~ 35153388 (-) False XLOC_002911
TCONS_00005390 mRNA upstream 64479 35116170 ~ 35149516 (-) False XLOC_002911
TCONS_00005391 mRNA upstream 64481 35116172 ~ 35149513 (-) True XLOC_002911
TCONS_00005381 other downstream 19680 34984618 ~ 34992414 (-) False XLOC_002907
TCONS_00005358 other downstream 684700 34327262 ~ 34327394 (-) True XLOC_002902
TCONS_00005343 other downstream 978673 34032283 ~ 34033421 (-) True XLOC_002893
TCONS_00005331 other downstream 1634880 33377130 ~ 33377214 (-) True XLOC_002885
TCONS_00005330 other downstream 1635008 33377001 ~ 33377086 (-) True XLOC_002884
TCONS_00005403 other upstream 318146 35369837 ~ 35387242 (-) True XLOC_002918
TCONS_00005406 other upstream 568642 35620333 ~ 35620449 (-) True XLOC_002922
TCONS_00005408 other upstream 602554 35654245 ~ 35654354 (-) True XLOC_002923
TCONS_00005410 other upstream 1111488 36163179 ~ 36163294 (-) True XLOC_002926
TCONS_00005427 other upstream 1435927 36487618 ~ 36502331 (-) True XLOC_002940

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000304_16769537_16780398.mRNA False 2201 mRNA 0.51 17 CI01000304 16769417 ~ 16780398 (-)