RNA id: TCONS_00005390


Basic Information

Item Value
RNA id TCONS_00005390
length 3510
RNA type mRNA
GC content 0.50
exon number 8
gene id XLOC_002911
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 35114153 ~ 35153388 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACAAGCTCTCAGTACAGACagggagaagaaaaaaacaaggaACAGCAGTTCACAACCTGCTagtctttcacacacacaaacctttttttattttatgtgaaaAACAGAACCGTACAGGATCTTACTTCACAGTTTGGAAAATGGACGTCCCAGAGAATTCCCCAGGGATTATGGGGCTTCTGAAAACTTTTGACGCTTCAGAGTTTGGGAGTTGGGAAAAGATTGGCTCCGGCGGCTTCGGACAGGTGTACAAAGTACGACACATGCAGTGGAAAACATGGCTGGCCATCAAATGCCCTCCCAGCCTTCATTCTGATGACAATGACCCGCAGGGGCTGGTGATGGAGTACATGGAGACGGGCTCTCTGGAGACTCTGCTGGCTACCGAGCCACTGCCCTGGGAGCTGCGTTTCCGGATCATCCACGAGACGGCGGTGGGCATGAACTTTCTGCACTGCATGAATCCACCTCTGCTCCATCTCGACCTCAAACCCGCAAACATCCTGCTGGACGCACACTATCACATCAAGATTTCTGACTTTGGTCTTGCACGGTGGAACGGTTTTGCCCGGGATGATGATATCAGTCGAGACGGGTTTTGTGGCACCATCGCCTACCTTCCTCCAGAGAGAATCATAGAAAAAGATCGAATCTCTGACACCAAACACGACGTGTACAGTTTCTCCATTGTTATCTGGGGAATTCTCACACAGAAGAAGCCATATCAAGGAGAAAACAACATCCTGCACATCATGGTGAAGGTGGTGAAAGGCGTCCGTCCAGACCTCAGCCTTATTCCCCGCAGTCGACCGCAGGCCTGCTCTGGCTTTCTGTCCCTCATGCAGAAGTGCTGGGCTCAGTCTCCACAAGCCAGACCAAGTTTTGAAGAAATCACATCAGAAGCTGAAGAACTGTGCACCAAACCCCATGAAGAGTCTAGAGCTTCTGTTTCTTCAGAGCCTGAATGTTCGCCCTGTCCTGCTCCTGCCTCCTCTGAACAGACGAACGACCAGAAGCCGGTGAGGCCGAAGTCCGCCATGTTACCTGAGAAAGACTACAGCCTGTCAGAGCTGCTGACTCAGATTGACTCGGGCTTCTCCCGCAGCTTAAGTAACGTCCAAGAAGAGTCCCTGGAGAGCAAAGACAACACCAGCAAGAGACTGTCAGGCATCTCCTCTGTGGACTCGGCTTTCTCATCACAAGGCTCCATTACGCTGTCTTTTGATAAGGAAAACGCTGTAAACGACTCCAGTGAGCTGCAGAAGAAGAAGCTCTGTGACGCGATCCGCACCGAGGACATCGCCAAGCTCATGAAGATCCTCCAGCCTCAAGACGTGGACCTGCTCCTGGATGGCGGCAGCAACTTGCTTCACTACGCTGTCAGTCTGGCCAACGAGGAAGCGGTCAAGTTCCTGCTGCTTAGCAACTGCAACCCCAACCTGGCTAATGCTCAGGGAGCCACGCCCCTCCACCAGGCTGCCGAAAAGCGTCTGAAGGGAGTGTCCGAGATCCTCCTGAGCCGCAAAACCACCAATGTAAACGCCAAAGACGAGGACCAGTACACACCTCTGCACTTCGCAGCACAAAACGGCGACGAGGCTCTAACCCGTTTACTCCTAGACCGCAGCGCTTCCATCAACGAAACAGACGCTCAGGGCCGCACACCAACACACATCGCCTGCCATCACGGACAGGAGAACGTGGTGAGGGTCCTGCTGAGTCGAGGAGCAGATGTCCACGTGAAGGGGAAAGACGACTGGACGGCGCTGCATCTAGCCGCATGGAAGGGTCATCTGGGCATCGTCAAGCTCCTGGTGAAGCAGGCTGGTGCTGATGTTGATGGTCAGACATCAGACGGACGCTCTCCGCTTCATCTAGCATCCCAGAGAGGTCAGTATCGGGTCGCACGAATCCTAGTGGAGCTGGGTGCTAATGTACATCTCACCTCCGACGACCTCTACGCTCCACTTCATGTGGCTGCGGAAACCGGGCACACCAGCACTTCAAGGCTACTTGTGAAGCATGATGCAGATATTAAAAGCCGAACGGCTAACGGCTGCACCGCCTTACACCTAGCCTCCCAGAAAGGCCATCTACCAACAGTTAAAATGCTTCTAGCGGAGGGTGCAGACCCTGAGAGCGTCAACCATGACCTTCGCACGCCGTGCCACCTGGCTGCCCAAAATGGCCACTGCGAAGTGCTCAAAGAGCTTCTGAGAAGCTGCTCGGACGTCGCTAATGCTCAGGATAGAAATGGACTGACTGCACTTCACCTGGCTGTAAGCGGAGGCCACAAAGATGCTATTTGCGTCTTGCTGGAAGGTGGCGCTGACGCGGCACCACTCACTCCACAGCCCGTCGGGGATCGTTCCTTCGACTACACGTCTGAATCTGAGCCGGAGAGTCCCAATCCTCTCACCCCAACCAGGAAAGTGGTGATACTAAAACTCACCAACCGCAAAAACTCTGAGCACACACTGATCCCTGTTGACGCTCGCTGCGAATCGGCACCTTGTTGAGGGTCCTACTGGGGCTTTGACTCCAGGAACTTTTGCTCAAGACACTTTCTGCCTCTTTTTTTGTCATTCACACAAGTGGTAAGACAGAGGCTCTCTCACTGAgatttaatgtacatactgtaattacTCCCTTATCGGACTCTCAAGGGTTTGGGCTGTTGTTGGCTTTCCATCTTCACAAtagaaatattttgtaattggaaatgcatgtatgtatatgtaaatatatatgtatattggtGCTGTAGATAGAGCTTGGATATCATCATCCACTTCTTGCCATTTCCATCTTTTTATTATGTCTGTTCTTCTTCTTGTTGCCCGAGTACCAGAATCTTCGTTACCCTAAACCAGAGTTTTCTTGTAGCATGTTGGAATAAGCTTCCCGTATATCAGCTTAATGTTGCACTTCAAATCTTGGCTTTAATTTAAAGAGAAAGTCTGAGGTCAATTATGTAATTAAAGGTGTTCACGCAAATATAGACCCATTTGGCTCGTACCATGGGAATGTGGCCTCGGGGGGATCACAGGTGTGGGTAGACTGTATGGGGGGAGTACTGTATCCATGTACCCTCATGTTCAGGCGATTGGCTCATTCCTGAGACCACTTTATCTTTTCATCACTCTGTAAAAGCAAAGCGCCGAGCCCTGCTTTATGCCAAGGGGGGCGTAGCCGTCATTATCTTTCACTGTCTGGAACAGACAGCCTCTCAATTGCTAGGTCCTTAAACTCCTGTTGAACTCTGGCTCTTTAAGATGTGATTCtgtgttgttattgttaatagAATCCCTGCATTTGTGGCTGTAGATAGTAAATCTTACGTAGCAAACTACCCAGTAATCCAATGCCAACCACTTCTGCAATGTCCTTTATTGATAAAGCTGCCTGTTTTTTCCCTTTTTGtatacaaaaatatgtttgtcatGAATCCATAGTGTTTGCACACTTTTATATTTGATGGAAAATTAAAGTGCATCACGTGAATTGGAA

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0016310 phosphorylation biological_process
GO:0005575 cellular_component cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG:

id description
ko01001 Protein kinases

ZFIN:

id description
ZDB-GENE-040426-2042 Predicted to enable ATP binding activity and protein kinase activity. Predicted to act upstream of or within protein phosphorylation. Is expressed in several structures, including EVL; digestive system; ectoderm; epidermis; and peripheral olfactory organ. Orthologous to human RIPK4 (receptor interacting serine/threonine kinase 4).

Ensembl:

ensembl_id ENSDART00000131291

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006090 lncRNA downstream 57726 35054281 ~ 35058444 (-) True XLOC_002909
TCONS_00005382 lncRNA downstream 123742 34984618 ~ 34992428 (-) True XLOC_002907
TCONS_00005378 lncRNA downstream 139447 34965764 ~ 34976723 (-) False XLOC_002907
TCONS_00005377 lncRNA downstream 146267 34965764 ~ 34969903 (-) False XLOC_002907
TCONS_00005373 lncRNA downstream 158146 34951231 ~ 34958024 (-) True XLOC_002906
TCONS_00005392 lncRNA upstream 10494 35160010 ~ 35164291 (-) True XLOC_002912
TCONS_00005401 lncRNA upstream 163376 35312892 ~ 35321637 (-) True XLOC_002917
TCONS_00006091 lncRNA upstream 279988 35429504 ~ 35431655 (-) True XLOC_002919
TCONS_00005407 lncRNA upstream 501068 35650584 ~ 35654680 (-) False XLOC_002923
TCONS_00006092 lncRNA upstream 662236 35811752 ~ 35964401 (-) False XLOC_002925
TCONS_00005387 mRNA downstream 7487 35059856 ~ 35108683 (-) False XLOC_002910
TCONS_00005388 mRNA downstream 12962 35059885 ~ 35103208 (-) True XLOC_002910
TCONS_00005385 mRNA downstream 63972 35012094 ~ 35052198 (-) False XLOC_002908
TCONS_00005384 mRNA downstream 64479 35012094 ~ 35051691 (-) False XLOC_002908
TCONS_00005393 mRNA upstream 20128 35169644 ~ 35177257 (-) False XLOC_002913
TCONS_00005394 mRNA upstream 20128 35169644 ~ 35186310 (-) True XLOC_002913
TCONS_00005395 mRNA upstream 52334 35201850 ~ 35236949 (-) False XLOC_002914
TCONS_00005396 mRNA upstream 52364 35201880 ~ 35220285 (-) True XLOC_002914
TCONS_00005397 mRNA upstream 88972 35238488 ~ 35248502 (-) True XLOC_002915
TCONS_00005381 other downstream 123756 34984618 ~ 34992414 (-) False XLOC_002907
TCONS_00005358 other downstream 788776 34327262 ~ 34327394 (-) True XLOC_002902
TCONS_00005343 other downstream 1082749 34032283 ~ 34033421 (-) True XLOC_002893
TCONS_00005331 other downstream 1738956 33377130 ~ 33377214 (-) True XLOC_002885
TCONS_00005330 other downstream 1739084 33377001 ~ 33377086 (-) True XLOC_002884
TCONS_00005403 other upstream 220321 35369837 ~ 35387242 (-) True XLOC_002918
TCONS_00005406 other upstream 470817 35620333 ~ 35620449 (-) True XLOC_002922
TCONS_00005408 other upstream 504729 35654245 ~ 35654354 (-) True XLOC_002923
TCONS_00005410 other upstream 1013663 36163179 ~ 36163294 (-) True XLOC_002926
TCONS_00005427 other upstream 1338102 36487618 ~ 36502331 (-) True XLOC_002940

Expression Profile

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