RNA id: TU491796


Basic Information

Item Value
RNA id TU491796
length 306
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G428308
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 17286751 ~ 17287056 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCGTTAGCAGCACACGTATGCGTCGTATACGTGGCCAATACTGAGCCAGTGTTCTGACGCAGAACCCAGAAGCACTGCACTGTGTTTAGACTTGACAGGTAAGAGAAGAGATTGTTGAATAAAGTCATTATTTTTGTTTTGTTTTTGCGCACAAAAAGTATTCTCGTCGCTTCATAACATTAAGGTTGAACCACTGTAGTCACATGGACTATTTTAACAATGTCTTTACTACCTTCCTGGGCCTTGAAAGTGGTAATAACATTGCAGTCTATCGTAGGCCAGAAACCTCTCGGATTTCATCAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU491795 lncRNA upstream 308 17286230 ~ 17286443 (+) True G428307
TU491663 lncRNA upstream 152476 17126021 ~ 17134275 (+) True G428182
TU491638 lncRNA upstream 227600 17055028 ~ 17059151 (+) True CI01000304_17054994_17056008
TU491746 lncRNA upstream 236073 17050395 ~ 17050678 (+) True G428262
TU491744 lncRNA upstream 236764 17048032 ~ 17049987 (+) True G428260
TU491807 lncRNA downstream 11146 17298202 ~ 17298668 (+) True G428316
TU492475 lncRNA downstream 51427 17338483 ~ 17338687 (+) True G428916
TU492521 lncRNA downstream 155878 17442934 ~ 17443324 (+) True G428954
TU492522 lncRNA downstream 156458 17443514 ~ 17443715 (+) True G428955
TU492527 lncRNA downstream 163907 17450963 ~ 17451287 (+) True G428960
CI01000304_17266905_17272656.mRNA mRNA upstream 14011 17266244 ~ 17272740 (+) True CI01000304_17266905_17272656
CI01000304_17210568_17214463.mRNA mRNA upstream 72113 17210568 ~ 17214638 (+) True CI01000304_17210568_17214463
CI01000304_17054994_17056008.mRNA mRNA upstream 229674 17054849 ~ 17057077 (+) False CI01000304_17054994_17056008
CI01000304_17009769_17023302.mRNA mRNA upstream 263161 17009769 ~ 17023590 (+) False CI01000304_17009769_17023302
CI01000304_16975753_16997470.mRNA mRNA upstream 289265 16975254 ~ 16997486 (+) True CI01000304_16975753_16997470
CI01000304_17290004_17290901.mRNA mRNA downstream 2948 17290004 ~ 17292234 (+) True CI01000304_17290004_17290901
CI01000304_17315088_17315342.mRNA mRNA downstream 28032 17315088 ~ 17315366 (+) False CI01000304_17315088_17315342
CI01000304_17453343_17454323.mRNA mRNA downstream 165896 17452952 ~ 17454439 (+) True CI01000304_17453343_17454323
CI01000304_17470746_17471711.mRNA mRNA downstream 183296 17470352 ~ 17471840 (+) True CI01000304_17470746_17471711
CI01000304_17478774_17479733.mRNA mRNA downstream 191301 17478357 ~ 17480784 (+) True CI01000304_17478774_17479733
TU491628 other upstream 269557 17010730 ~ 17017194 (+) False CI01000304_17009769_17023302
TU491635 other upstream 525099 16755946 ~ 16761111 (+) True G428157
TU491561 other upstream 745706 16513714 ~ 16541045 (+) True G428096
TU491458 other upstream 1203037 16083230 ~ 16083714 (+) True G428017
TU491290 other upstream 1397160 15885454 ~ 15889591 (+) True G427860
TU491773 other downstream 27782 17314838 ~ 17314930 (+) True G428289
TU492630 other downstream 395215 17682271 ~ 17684763 (+) True G429050
TU492542 other downstream 416254 17703310 ~ 17704096 (+) True CI01000304_17698564_17703891

Expression Profile