RNA id: TCONS_00004359


Basic Information

Item Value
RNA id TCONS_00004359
length 1730
RNA type mRNA
GC content 0.45
exon number 13
gene id XLOC_002281
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 35554219 ~ 35580086 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACCGGCACCCTTTCCGACACTCGGATTAAAGATGGCGCCCTCTCATGCGGTAAGATGCTGTCAGCGGGGTTTATCCTGGATACCTGTGATTTTCATCAACCTGGTCGTTTGCTGGTCCTACTACGCGTACGTGGTGGAGCTCTGCATCTACACAATCCCGAACGTGAACGAGCAAGTTATTTATCTGGTAGTCTTTCATGCTTTTTTCTTCATGTTCATGTGGTCCTACTGGAAGACCATCAGTTCCAAGCCTACAAACCCCTCAAAAGAGTTCTGTCTCCCTAAGGCTGAGAAAGAGCTGTATGAGAAAGAGGAGAGACCAGAGGCCCAGCAGGACATCCTGAAGAGAGTGGCCAGAGAATTACCTATATATACATTCACAGGATCTGGGGCTATCCGCTACTGTGACCGCTGTCAGTTGATCAAACCGGACAGATGTCATCACTGCTCGACCTGCGACAAATGTGTCTTAAAAATGGATCACCACTGTCCATGGGTCAATAATTGTGTTGGATTCTCCAACTACAAGTTCTTTGTGCTTTTTCTGGCCTACTCTATGCTGTACTGCGTCTACATCGCCGCCACAGTATTGCAGTACTTTATCAAGTTCTGGACCAATCAGCTGCCTGACACTCATGCTAAGTTCCATGTGTTGTTCCTGTTCTTCGTGGCGGCCATGTTCTTCATCAGTATCCTGTCACTCTTCAGTTACCACCTGTGGCTTGTGGGGAAAAATAGAACCACTATAGAGGCGTTCAGGGCACCGGTGTTCAGAAATGGCCCAGATAAAAATGGCTTCACACTGGGTTTCCGCAAGAACATCACCCAGGTGTTCGGAGACCAGAAGAAATACTGGTGCTTGCCCATTTTCAGCAGtTTGGGTGATGGTTACACCTTCCCTACCCGCCTAGTCACTGTTGACGTGGAGCATGGCAACATTGAACACCAAACCATTAAATGCACTGTTGATGGACAGACTAACGCCAGACCTCTGAGTGAGTCTCAGAATCATCTGCTCTGCAATGATGAGGGCCAGAAGGACAGCAGCATGGCCGCCATCGAGGTGTGTCAACCTGTTTGTGTTACCTTGGAGAACGAGTCCTAATCCAGGAGTTTTCAGTGGCACTGGGACATCTTTCCTCTCTTCAGGATGTATTGTTTCCTATAAGACCTCACGTGGAAGACCGCAGAGCCCTCAGATACAATGCCTTAAGGTTAGCATTATTTCCAGGAAAGACCAGTGCCCTGGTGGATGTTTATGTATCCGACTCTCAAGCTCTTCACACCAAACGGATCTTCATAACTCACTTTtccatttgtccatctgtctgacCAAAATACCCTAAGATGACCTTCAAGTTTGATTCTTAGTCCTAAATACAATGGTTAATCTCGGGGACTGCTTTATTTGTGTAGGCCAAAAACTCAGTCTGGCGTTTTTACCCAAGATGCACTTTCGTGTGGAATGGTTTTGCAGATGTTTACGGATCTAAATTAACATGTGCGAGTGCAATGCAGTATTTGATCAGAATGTGTTCATTCACTACAGCAACATCACCTCAACTAATACTGTAGATTATGTAGTAGGTATTTGTTTGAGTGATAATTCAGAAGAAAGTGCAATGAGGCGTTTAATATTTTAGATAATTACAAAACTGGAACGCTTTATAGTGTTTAATAGCTACTTTGTttatacatgtatacacacacacacacacacacacaaaaat

Function

GO:

id name namespace
GO:0006612 protein targeting to membrane biological_process
GO:0018230 peptidyl-L-cysteine S-palmitoylation biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016409 palmitoyltransferase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0016746 transferase activity, transferring acyl groups molecular_function
GO:0019706 protein-cysteine S-palmitoyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070424-38 Predicted to enable protein-cysteine S-palmitoyltransferase activity. Predicted to be involved in peptidyl-L-cysteine S-palmitoylation and protein targeting to membrane. Predicted to be located in Golgi membrane; perinuclear region of cytoplasm; and plasma membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus and endoplasmic reticulum. Orthologous to human ZDHHC20 (zinc finger DHHC-type palmitoyltransferase 20).

Ensembl:

ensembl_id ENSDART00000077373

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005726 lncRNA upstream 102139 35446908 ~ 35452080 (+) True XLOC_002279
TCONS_00005923 lncRNA upstream 139942 35369819 ~ 35414277 (+) True XLOC_002277
TCONS_00005922 lncRNA upstream 143000 35369819 ~ 35411219 (+) False XLOC_002277
TCONS_00005921 lncRNA upstream 164522 35369592 ~ 35389697 (+) False XLOC_002277
TCONS_00004348 lncRNA upstream 261988 35291231 ~ 35292231 (+) True XLOC_002274
TCONS_00005924 lncRNA downstream 621098 36201184 ~ 36342453 (+) False XLOC_002294
TCONS_00004376 lncRNA downstream 621108 36201194 ~ 36224880 (+) False XLOC_002294
TCONS_00004377 lncRNA downstream 621112 36201198 ~ 36224878 (+) False XLOC_002294
TCONS_00004378 lncRNA downstream 621113 36201199 ~ 36381043 (+) False XLOC_002294
TCONS_00005925 lncRNA downstream 621123 36201209 ~ 36203601 (+) False XLOC_002294
TCONS_00004356 mRNA upstream 25830 35468978 ~ 35528389 (+) False XLOC_002280
TCONS_00004358 mRNA upstream 25830 35526528 ~ 35528389 (+) True XLOC_002280
TCONS_00004357 mRNA upstream 53516 35491216 ~ 35500703 (+) False XLOC_002280
TCONS_00004355 mRNA upstream 102028 35439952 ~ 35452191 (+) False XLOC_002279
TCONS_00004353 mRNA upstream 116595 35417099 ~ 35437624 (+) False XLOC_002278
TCONS_00004362 mRNA downstream 372446 35952532 ~ 35959571 (+) False XLOC_002284
TCONS_00004363 mRNA downstream 372982 35953068 ~ 35959294 (+) True XLOC_002284
TCONS_00004364 mRNA downstream 446490 36026576 ~ 36031367 (+) False XLOC_002285
TCONS_00004365 mRNA downstream 449451 36029537 ~ 36032038 (+) True XLOC_002285
TCONS_00004366 mRNA downstream 457891 36037977 ~ 36063414 (+) True XLOC_002286
TCONS_00004347 other upstream 255520 35288158 ~ 35298699 (+) False XLOC_002274
TCONS_00004342 other upstream 397691 35153100 ~ 35156528 (+) False XLOC_002270
TCONS_00004338 other upstream 544782 35002798 ~ 35009437 (+) False XLOC_002268
TCONS_00004339 other upstream 545123 35005895 ~ 35009096 (+) True XLOC_002268
TCONS_00004335 other upstream 602687 34951056 ~ 34951532 (+) True XLOC_002266
TCONS_00004360 other downstream 64633 35644719 ~ 35644798 (+) True XLOC_002282
TCONS_00004361 other downstream 64931 35645017 ~ 35645135 (+) True XLOC_002283
TCONS_00004370 other downstream 578881 36158967 ~ 36160287 (+) False XLOC_002289
TCONS_00004371 other downstream 579526 36159612 ~ 36160187 (+) True XLOC_002289
TCONS_00004384 other downstream 707755 36287841 ~ 36288503 (+) True XLOC_002299

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU491628 False 611 TUCP 0.47 7 CI01000304 17010730 ~ 17017194 (+)